Back to "Blame Jeroen" build/check report for BioC 3.11

CHECK report for DelayedMatrixStats on tokay2

This page was generated on 2020-03-08 03:00:07 -0400 (Sun, 08 Mar 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
Package 24/82HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DelayedMatrixStats 1.9.0
Peter Hickey
Snapshot Date: 2020-03-07 17:00:01 -0500 (Sat, 07 Mar 2020)
URL: https://git.bioconductor.org/packages/DelayedMatrixStats
Branch: master
Last Commit: c3fc590
Last Changed Date: 2019-10-29 13:42:32 -0500 (Tue, 29 Oct 2019)
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ ERROR ] OK 

Summary

Package: DelayedMatrixStats
Version: 1.9.0
Command: C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD check --force-multiarch --install=check:DelayedMatrixStats.install-out.txt --library=C:\Users\bioctesting\bbs-3.11-bioc-testing\R\library --no-vignettes --timings DelayedMatrixStats_1.9.0.tar.gz
StartedAt: 2020-03-07 21:50:57 -0500 (Sat, 07 Mar 2020)
EndedAt: 2020-03-07 21:58:31 -0500 (Sat, 07 Mar 2020)
EllapsedTime: 453.9 seconds
RetCode: 1
Status:  ERROR  
CheckDir: DelayedMatrixStats.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD check --force-multiarch --install=check:DelayedMatrixStats.install-out.txt --library=C:\Users\bioctesting\bbs-3.11-bioc-testing\R\library --no-vignettes --timings DelayedMatrixStats_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/DelayedMatrixStats.Rcheck'
* using R version 4.0.0 Under development (Rtools 4.0) (2020-01-22 r77697)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DelayedMatrixStats/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DelayedMatrixStats' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DelayedMatrixStats' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colAlls.Rd:70: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colAnyNAs.Rd:53: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colAvgsPerRowSet.Rd:59: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCollapse.Rd:45: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCollapse.Rd:83: file link '[' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCounts.Rd:51: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCummaxs.Rd:87: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCummaxs.Rd:133: file link 'cumprod' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCummaxs.Rd:134: file link 'cummin' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCummaxs.Rd:134: file link 'cummax' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colDiffs.Rd:51: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colIQRDiffs.Rd:117: file link 'var' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colIQRDiffs.Rd:108: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colIQRDiffs.Rd:172: file link 'var' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colIQRs.Rd:41: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colLogSumExps.Rd:49: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colMads.Rd:73: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colMeans2.Rd:59: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colMedians.Rd:47: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colOrderStats.Rd:46: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colProds.Rd:52: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colProds.Rd:78: file link 'is.nan' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colQuantiles.Rd:55: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colRanks.Rd:56: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colSums2.Rd:59: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colTabulates.Rd:42: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colVars.Rd:51: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedMads.Rd:59: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedMeans.Rd:47: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedMedians.Rd:47: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedVars.Rd:66: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedVars.Rd:115: file link 'var' in package 'stats' does not exist and so has been treated as a topic
See 'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/DelayedMatrixStats.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  'BiocParallel' 'HDF5Array'
  All declared Imports should be used.
Unexported objects imported by ':::' calls:
  'DelayedArray:::.get_ans_type'
  'DelayedArray:::.reduce_array_dimensions'
  'DelayedArray:::RleArraySeed' 'DelayedArray:::colblock_APPLY'
  'DelayedArray:::get_Nindex_lengths'
  'DelayedArray:::get_verbose_block_processing'
  'DelayedArray:::set_dim' 'DelayedArray:::set_dimnames'
  'DelayedArray:::subset_by_Nindex' 'DelayedArray:::to_linear_index'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  == testthat results  ===========================================================
  [ OK: 15011 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 72 ]
  1. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  2. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  3. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  4. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  5. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  6. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  7. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  8. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  9. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
** running tests for arch 'x64' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  == testthat results  ===========================================================
  [ OK: 15011 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 72 ]
  1. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  2. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  3. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  4. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  5. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  6. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  7. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  8. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  9. Failure: Default arguments (@test_row_and_col_functions.R#49) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 WARNING, 1 NOTE
See
  'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/DelayedMatrixStats.Rcheck/00check.log'
for details.

Installation output

DelayedMatrixStats.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/DelayedMatrixStats_1.9.0.tar.gz && rm -rf DelayedMatrixStats.buildbin-libdir && mkdir DelayedMatrixStats.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedMatrixStats.buildbin-libdir DelayedMatrixStats_1.9.0.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL DelayedMatrixStats_1.9.0.zip && rm DelayedMatrixStats_1.9.0.tar.gz DelayedMatrixStats_1.9.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 53160  100 53160    0     0   794k      0 --:--:-- --:--:-- --:--:--  879k

install for i386

* installing *source* package 'DelayedMatrixStats' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DelayedMatrixStats'
    finding HTML links ... done
    DelayedMatrixStats                      html  
    colAlls                                 html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colAlls.Rd:70: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colAnyNAs                               html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colAnyNAs.Rd:53: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colAvgsPerRowSet                        html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colAvgsPerRowSet.Rd:59: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colCollapse                             html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCollapse.Rd:45: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCollapse.Rd:83: file link '[' in package 'base' does not exist and so has been treated as a topic
    colCounts                               html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCounts.Rd:51: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colCummaxs                              html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCummaxs.Rd:87: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCummaxs.Rd:133: file link 'cumprod' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCummaxs.Rd:134: file link 'cummin' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colCummaxs.Rd:134: file link 'cummax' in package 'base' does not exist and so has been treated as a topic
    colDiffs                                html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colDiffs.Rd:51: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colIQRDiffs                             html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colIQRDiffs.Rd:117: file link 'var' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colIQRDiffs.Rd:108: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colIQRDiffs.Rd:172: file link 'var' in package 'stats' does not exist and so has been treated as a topic
    colIQRs                                 html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colIQRs.Rd:41: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colLogSumExps                           html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colLogSumExps.Rd:49: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colMads                                 html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colMads.Rd:73: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colMeans2                               html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colMeans2.Rd:59: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colMedians                              html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colMedians.Rd:47: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colOrderStats                           html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colOrderStats.Rd:46: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colProds                                html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colProds.Rd:52: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colProds.Rd:78: file link 'is.nan' in package 'base' does not exist and so has been treated as a topic
    colQuantiles                            html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colQuantiles.Rd:55: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colRanks                                html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colRanks.Rd:56: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colSums2                                html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colSums2.Rd:59: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colTabulates                            html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colTabulates.Rd:42: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colVars                                 html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colVars.Rd:51: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colWeightedMads                         html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedMads.Rd:59: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colWeightedMeans                        html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedMeans.Rd:47: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colWeightedMedians                      html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedMedians.Rd:47: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
    colWeightedVars                         html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedVars.Rd:66: file link 'getAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpm8jaYk/R.INSTALL5181bac1cd4/DelayedMatrixStats/man/colWeightedVars.Rd:115: file link 'var' in package 'stats' does not exist and so has been treated as a topic
    from_DelayedArray_to_simple_seed_class
                                            html  
    rowblock_APPLY                          html  
    seedClass                               html  
    subset_by_Nindex                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DelayedMatrixStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedMatrixStats' as DelayedMatrixStats_1.9.0.zip
* DONE (DelayedMatrixStats)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'DelayedMatrixStats' successfully unpacked and MD5 sums checked

Tests output

DelayedMatrixStats.Rcheck/tests_i386/testthat.Rout.fail


R version 4.0.0 Under development (Rtools 4.0) (2020-01-22 r77697) -- "Blame Jeroen"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(DelayedMatrixStats)
Loading required package: DelayedArray
Loading required package: stats4
Loading required package: matrixStats
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: BiocParallel

Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following objects are masked from 'package:base':

    aperm, apply, rowsum


Attaching package: 'DelayedMatrixStats'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyMissings, colAnyNAs, colAnys, colAvgsPerRowSet,
    colCollapse, colCounts, colCummaxs, colCummins, colCumprods,
    colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps,
    colMadDiffs, colMads, colMeans2, colMedians, colOrderStats,
    colProds, colQuantiles, colRanks, colSdDiffs, colSds, colSums2,
    colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyMissings, rowAnyNAs, rowAnys,
    rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins,
    rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs,
    rowLogSumExps, rowMadDiffs, rowMads, rowMeans2, rowMedians,
    rowOrderStats, rowProds, rowQuantiles, rowRanks, rowSdDiffs,
    rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

> 
> test_check("DelayedMatrixStats")
Loading required package: rhdf5
-- 1. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 2. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 3. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 4. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 5. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 6. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 7. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 8. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 9. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 10. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 11. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 12. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 13. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_, NA_integer_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 14. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_, NA_integer_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 15. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_, NA_integer_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 16. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 17. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 18. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 19. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 20. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 21. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 22. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 23. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 24. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 25. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 26. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 27. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 28. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 29. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 30. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 31. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 32. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 33. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 34. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA, C2 = NA, C3 = NA, C4 = NA).
Types not compatible: double is not logical

-- 35. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA, C2 = NA, C3 = NA, C4 = NA).
Types not compatible: double is not logical

-- 36. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA, C2 = NA, C3 = NA, C4 = NA).
Types not compatible: double is not logical

-- 37. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 38. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 39. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 40. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 41. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 42. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 43. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 44. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 45. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 46. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 47. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 48. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 49. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 50. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 51. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 52. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 53. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 54. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 55. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 56. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 57. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 58. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), .Dim = c(3L, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 59. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), .Dim = c(3L, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 60. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), .Dim = c(3L, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 61. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 62. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 63. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 64. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 65. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 66. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 67. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 68. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 69. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 70. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA, R2 = NA, R3 = NA).
Types not compatible: double is not logical

-- 71. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA, R2 = NA, R3 = NA).
Types not compatible: double is not logical

-- 72. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA, R2 = NA, R3 = NA).
Types not compatible: double is not logical

== testthat results  ===========================================================
[ OK: 15011 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 72 ]
1. Failure: Default arguments (@test_row_and_col_functions.R#49) 
2. Failure: Default arguments (@test_row_and_col_functions.R#49) 
3. Failure: Default arguments (@test_row_and_col_functions.R#49) 
4. Failure: Default arguments (@test_row_and_col_functions.R#49) 
5. Failure: Default arguments (@test_row_and_col_functions.R#49) 
6. Failure: Default arguments (@test_row_and_col_functions.R#49) 
7. Failure: Default arguments (@test_row_and_col_functions.R#49) 
8. Failure: Default arguments (@test_row_and_col_functions.R#49) 
9. Failure: Default arguments (@test_row_and_col_functions.R#49) 
1. ...

Error: testthat unit tests failed
Execution halted

DelayedMatrixStats.Rcheck/tests_x64/testthat.Rout.fail


R version 4.0.0 Under development (Rtools 4.0) (2020-01-22 r77697) -- "Blame Jeroen"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(DelayedMatrixStats)
Loading required package: DelayedArray
Loading required package: stats4
Loading required package: matrixStats
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: BiocParallel

Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following objects are masked from 'package:base':

    aperm, apply, rowsum


Attaching package: 'DelayedMatrixStats'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyMissings, colAnyNAs, colAnys, colAvgsPerRowSet,
    colCollapse, colCounts, colCummaxs, colCummins, colCumprods,
    colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps,
    colMadDiffs, colMads, colMeans2, colMedians, colOrderStats,
    colProds, colQuantiles, colRanks, colSdDiffs, colSds, colSums2,
    colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyMissings, rowAnyNAs, rowAnys,
    rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins,
    rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs,
    rowLogSumExps, rowMadDiffs, rowMads, rowMeans2, rowMedians,
    rowOrderStats, rowProds, rowQuantiles, rowRanks, rowSdDiffs,
    rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

> 
> test_check("DelayedMatrixStats")
Loading required package: rhdf5
-- 1. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 2. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 3. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 4. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 5. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 6. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 7. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 8. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 9. Failure: Default arguments (@test_row_and_col_functions.R#49)  -----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE, TRUE).
4 element mismatches

-- 10. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 11. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 12. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE, FALSE) not equal to c(NA, NA, NA, NA).
'is.NA' value mismatch: 4 in current 0 in target

-- 13. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_, NA_integer_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 14. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_, NA_integer_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 15. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_, NA_integer_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 16. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 17. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 18. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 19. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 20. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 21. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 22. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 23. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 24. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 25. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 26. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 27. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_, NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 28. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 29. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 30. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 31. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 32. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 33. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA_real_, C2 = NA_real_, C3 = NA_real_, C4 = NA_real_).
4/4 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA
[4] 0 - NA == NA

-- 34. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA, C2 = NA, C3 = NA, C4 = NA).
Types not compatible: double is not logical

-- 35. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA, C2 = NA, C3 = NA, C4 = NA).
Types not compatible: double is not logical

-- 36. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(C1 = 0, C2 = 0, C3 = 0, C4 = 0) not equal to c(C1 = NA, C2 = NA, C3 = NA, C4 = NA).
Types not compatible: double is not logical

-- 37. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 38. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 39. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 40. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 41. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 42. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 43. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 44. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 45. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(TRUE, TRUE, TRUE).
3 element mismatches

-- 46. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 47. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 48. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(FALSE, FALSE, FALSE) not equal to c(NA, NA, NA).
'is.NA' value mismatch: 3 in current 0 in target

-- 49. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 50. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 51. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0L, 0L, 0L) not equal to c(NA_integer_, NA_integer_, NA_integer_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 52. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 53. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 54. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 55. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 56. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 57. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 58. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), .Dim = c(3L, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 59. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), .Dim = c(3L, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 60. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
structure(c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), .Dim = c(3L, ...) not equal to structure(c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, ...).
Types not compatible: double is not logical

-- 61. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 62. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 63. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(0, 0, 0) not equal to c(NA_real_, NA_real_, NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 64. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 65. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 66. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 67. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 68. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 69. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA_real_, R2 = NA_real_, R3 = NA_real_).
3/3 mismatches (average diff: NaN)
[1] 0 - NA == NA
[2] 0 - NA == NA
[3] 0 - NA == NA

-- 70. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA, R2 = NA, R3 = NA).
Types not compatible: double is not logical

-- 71. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA, R2 = NA, R3 = NA).
Types not compatible: double is not logical

-- 72. Failure: Default arguments (@test_row_and_col_functions.R#49)  ----------
c(R1 = 0, R2 = 0, R3 = 0) not equal to c(R1 = NA, R2 = NA, R3 = NA).
Types not compatible: double is not logical

== testthat results  ===========================================================
[ OK: 15011 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 72 ]
1. Failure: Default arguments (@test_row_and_col_functions.R#49) 
2. Failure: Default arguments (@test_row_and_col_functions.R#49) 
3. Failure: Default arguments (@test_row_and_col_functions.R#49) 
4. Failure: Default arguments (@test_row_and_col_functions.R#49) 
5. Failure: Default arguments (@test_row_and_col_functions.R#49) 
6. Failure: Default arguments (@test_row_and_col_functions.R#49) 
7. Failure: Default arguments (@test_row_and_col_functions.R#49) 
8. Failure: Default arguments (@test_row_and_col_functions.R#49) 
9. Failure: Default arguments (@test_row_and_col_functions.R#49) 
1. ...

Error: testthat unit tests failed
Execution halted

Example timings

DelayedMatrixStats.Rcheck/examples_i386/DelayedMatrixStats-Ex.timings

nameusersystemelapsed
colAlls0.040.000.05
colAnyNAs0.410.000.43
colAvgsPerRowSet0.310.000.31
colCollapse0.170.030.27
colCounts0.490.000.48
colCummaxs0.120.000.14
colDiffs0.110.030.17
colIQRDiffs0.170.050.22
colIQRs0.010.000.02
colLogSumExps0.030.000.03
colMads0.160.010.17
colMeans20.020.020.03
colMedians0.030.000.03
colOrderStats0.060.000.07
colProds0.060.040.14
colQuantiles0.020.040.04
colRanks0.040.000.05
colSums20.020.010.03
colTabulates0.220.030.25
colVars0.120.000.16
colWeightedMads000
colWeightedMeans0.070.000.06
colWeightedMedians0.030.000.03
colWeightedVars0.110.000.11

DelayedMatrixStats.Rcheck/examples_x64/DelayedMatrixStats-Ex.timings

nameusersystemelapsed
colAlls0.080.000.07
colAnyNAs0.370.010.41
colAvgsPerRowSet0.640.020.65
colCollapse0.170.030.28
colCounts0.170.000.17
colCummaxs0.220.000.22
colDiffs0.090.010.12
colIQRDiffs0.140.000.15
colIQRs000
colLogSumExps0.030.000.03
colMads0.100.040.12
colMeans20.010.000.02
colMedians0.020.010.03
colOrderStats0.030.000.03
colProds0.050.020.09
colQuantiles0.000.010.01
colRanks0.020.000.02
colSums20.000.020.02
colTabulates0.120.010.14
colVars0.070.030.12
colWeightedMads000
colWeightedMeans0.060.000.06
colWeightedMedians0.030.000.03
colWeightedVars0.120.000.13