Back to "Blame Jeroen" build/check report for BioC 3.11

INSTALL report for DelayedMatrixStats on tokay2

This page was generated on 2020-04-15 03:20:10 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE DelayedMatrixStats PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 27/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DelayedMatrixStats 1.9.1
Peter Hickey
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/DelayedMatrixStats
Branch: master
Last Commit: 764d888
Last Changed Date: 2020-03-29 22:38:58 -0400 (Sun, 29 Mar 2020)
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 

Summary

Package: DelayedMatrixStats
Version: 1.9.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/DelayedMatrixStats_1.9.1.tar.gz && rm -rf DelayedMatrixStats.buildbin-libdir && mkdir DelayedMatrixStats.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedMatrixStats.buildbin-libdir DelayedMatrixStats_1.9.1.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL DelayedMatrixStats_1.9.1.zip && rm DelayedMatrixStats_1.9.1.tar.gz DelayedMatrixStats_1.9.1.zip
StartedAt: 2020-04-14 18:08:20 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:08:51 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 31.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/DelayedMatrixStats_1.9.1.tar.gz && rm -rf DelayedMatrixStats.buildbin-libdir && mkdir DelayedMatrixStats.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedMatrixStats.buildbin-libdir DelayedMatrixStats_1.9.1.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL DelayedMatrixStats_1.9.1.zip && rm DelayedMatrixStats_1.9.1.tar.gz DelayedMatrixStats_1.9.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 53578  100 53578    0     0   723k      0 --:--:-- --:--:-- --:--:--  792k

install for i386

* installing *source* package 'DelayedMatrixStats' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DelayedMatrixStats'
    finding HTML links ... done
    DelayedMatrixStats                      html  
    colAlls                                 html  
    finding level-2 HTML links ... done

    colAnyNAs                               html  
    colAvgsPerRowSet                        html  
    colCollapse                             html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colCollapse.Rd:94: file link '[' in package 'base' does not exist and so has been treated as a topic
    colCounts                               html  
    colCummaxs                              html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colCummaxs.Rd:180: file link 'cumprod' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colCummaxs.Rd:181: file link 'cummin' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colCummaxs.Rd:181: file link 'cummax' in package 'base' does not exist and so has been treated as a topic
    colDiffs                                html  
    colIQRDiffs                             html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colIQRDiffs.Rd:228: file link 'var' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colIQRDiffs.Rd:283: file link 'var' in package 'stats' does not exist and so has been treated as a topic
    colIQRs                                 html  
    colLogSumExps                           html  
    colMads                                 html  
    colMeans2                               html  
    colMedians                              html  
    colOrderStats                           html  
    colProds                                html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colProds.Rd:92: file link 'product' in package 'matrixStats' does not exist and so has been treated as a topic
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colProds.Rd:107: file link 'is.nan' in package 'base' does not exist and so has been treated as a topic
    colQuantiles                            html  
    colRanks                                html  
    colSums2                                html  
    colTabulates                            html  
    colVars                                 html  
    colWeightedMads                         html  
    colWeightedMeans                        html  
    colWeightedMedians                      html  
    colWeightedVars                         html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmpis1ZjE/R.INSTALLc306ac92fd5/DelayedMatrixStats/man/colWeightedVars.Rd:138: file link 'var' in package 'stats' does not exist and so has been treated as a topic
    from_DelayedArray_to_simple_seed_class
                                            html  
    rowblock_APPLY                          html  
    seedClass                               html  
    subset_by_Nindex                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DelayedMatrixStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedMatrixStats' as DelayedMatrixStats_1.9.1.zip
* DONE (DelayedMatrixStats)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'DelayedMatrixStats' successfully unpacked and MD5 sums checked