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BioC 3.7: BUILD report for EWCE on merida2

This page was generated on 2017-10-30 07:18:33 -0400 (Mon, 30 Oct 2017).

Package 441/1473HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EWCE 1.5.1
Nathan Skene
Snapshot Date: 2017-10-29 17:00:18 -0400 (Sun, 29 Oct 2017)
URL: https://git.bioconductor.org/packages/EWCE
Branch: master
Last Commit: 151da2a
Last Changed Date: 2017-04-24 19:30:40 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  NotNeeded [ ERROR ] skipped  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: EWCE
Version: 1.5.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE
StartedAt: 2017-10-29 19:55:13 -0400 (Sun, 29 Oct 2017)
EndedAt: 2017-10-29 19:56:18 -0400 (Sun, 29 Oct 2017)
EllapsedTime: 65.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE
###
##############################################################################
##############################################################################


* checking for file ‘EWCE/DESCRIPTION’ ... OK
* preparing ‘EWCE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning: Package 'EWCE' is deprecated and will be removed from Bioconductor
  version 3.7
sh: line 1: 99130 Abort trap: 6           'convert' 'EWCE_files/figure-html/unnamed-chunk-2-1.png' -trim 'EWCE_files/figure-html/unnamed-chunk-2-1.png' > /dev/null
sh: line 1: 99404 Abort trap: 6           'convert' 'EWCE_files/figure-html/unnamed-chunk-3-1.png' -trim 'EWCE_files/figure-html/unnamed-chunk-3-1.png' > /dev/null
sh: line 1: 99657 Abort trap: 6           'convert' 'EWCE_files/figure-html/unnamed-chunk-4-1.png' -trim 'EWCE_files/figure-html/unnamed-chunk-4-1.png' > /dev/null
sh: line 1: 99982 Abort trap: 6           'convert' 'EWCE_files/figure-html/unnamed-chunk-11-1.png' -trim 'EWCE_files/figure-html/unnamed-chunk-11-1.png' > /dev/null
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 138 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 217 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 138 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 50 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 490 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 519 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 332 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 345 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 199 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 221 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 221 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 221 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 413 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 335 rows containing non-finite values (stat_boxplot).
Quitting from lines 220-223 (EWCE.Rmd) 
Error: processing vignette 'EWCE.Rmd' failed with diagnostics:
Invalid attribute(s): percentage_gc_content 
Please use the function 'listAttributes' to get valid attribute names
Execution halted