Back to the "Multiple platform build/check report"

BioC experimental data: CHECK report for cMap2data on moscato1

This page was generated on 2016-05-28 20:31:14 -0700 (Sat, 28 May 2016).

Package 46/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cMap2data 1.9.0
J. Saez-Rodriguez
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/cMap2data
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: cMap2data
Version: 1.9.0
Command: rm -rf cMap2data.buildbin-libdir cMap2data.Rcheck && mkdir cMap2data.buildbin-libdir cMap2data.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cMap2data.buildbin-libdir cMap2data_1.9.0.tar.gz >cMap2data.Rcheck\00install.out 2>&1 && cp cMap2data.Rcheck\00install.out cMap2data-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=cMap2data.buildbin-libdir --install="check:cMap2data-install.out" --force-multiarch --no-vignettes --timings cMap2data_1.9.0.tar.gz
StartedAt: 2016-05-28 13:50:58 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 13:52:21 -0700 (Sat, 28 May 2016)
EllapsedTime: 83.5 seconds
RetCode: 0
Status:  OK  
CheckDir: cMap2data.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cMap2data.buildbin-libdir cMap2data.Rcheck && mkdir cMap2data.buildbin-libdir cMap2data.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cMap2data.buildbin-libdir cMap2data_1.9.0.tar.gz >cMap2data.Rcheck\00install.out 2>&1 && cp cMap2data.Rcheck\00install.out cMap2data-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=cMap2data.buildbin-libdir --install="check:cMap2data-install.out" --force-multiarch --no-vignettes --timings cMap2data_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/cMap2data.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cMap2data/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cMap2data' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cMap2data' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 41.3Mb
  sub-directories of 1Mb or more:
    data  41.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: cMap2data-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/cMap2data.Rcheck/00check.log'
for details.


cMap2data.Rcheck/00install.out:


install for i386

* installing *source* package 'cMap2data' ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'cMap2data' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cMap2data' as cMap2data_1.9.0.zip
* DONE (cMap2data)

cMap2data.Rcheck/examples_i386/cMap2data-Ex.timings:

nameusersystemelapsed
cMap2data-package0.000.020.02
cytodrug000
drugClusters000
drugRL000
druglabels000
genelist0.020.000.01

cMap2data.Rcheck/examples_x64/cMap2data-Ex.timings:

nameusersystemelapsed
cMap2data-package0.020.000.01
cytodrug000
drugClusters0.010.000.02
drugRL000
druglabels000
genelist0.020.000.02