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BioC experimental data: CHECK report for NCIgraphData on moscato1

This page was generated on 2016-05-28 20:31:08 -0700 (Sat, 28 May 2016).

Package 191/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NCIgraphData 1.9.0
Laurent Jacob
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/NCIgraphData
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 

Summary

Package: NCIgraphData
Version: 1.9.0
Command: rm -rf NCIgraphData.buildbin-libdir NCIgraphData.Rcheck && mkdir NCIgraphData.buildbin-libdir NCIgraphData.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NCIgraphData.buildbin-libdir NCIgraphData_1.9.0.tar.gz >NCIgraphData.Rcheck\00install.out 2>&1 && cp NCIgraphData.Rcheck\00install.out NCIgraphData-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=NCIgraphData.buildbin-libdir --install="check:NCIgraphData-install.out" --force-multiarch --no-vignettes --timings NCIgraphData_1.9.0.tar.gz
StartedAt: 2016-05-28 15:46:09 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 15:48:41 -0700 (Sat, 28 May 2016)
EllapsedTime: 151.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: NCIgraphData.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   rm -rf NCIgraphData.buildbin-libdir NCIgraphData.Rcheck && mkdir NCIgraphData.buildbin-libdir NCIgraphData.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NCIgraphData.buildbin-libdir NCIgraphData_1.9.0.tar.gz >NCIgraphData.Rcheck\00install.out 2>&1 && cp NCIgraphData.Rcheck\00install.out NCIgraphData-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=NCIgraphData.buildbin-libdir --install="check:NCIgraphData-install.out" --force-multiarch --no-vignettes --timings NCIgraphData_1.9.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/NCIgraphData.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'NCIgraphData/DESCRIPTION' ... OK
* this is package 'NCIgraphData' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'NCIgraphData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                        old_size new_size compress
  NCI-cyList.RData         4.3Mb    2.0Mb       xz
  reactome-cyList.RData    1.1Mb    558Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
NCI.cyList  2.5   0.08   16.14
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/NCIgraphData.Rcheck/00check.log'
for details.


NCIgraphData.Rcheck/00install.out:


install for i386

* installing *source* package 'NCIgraphData' ...
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'NCIgraphData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NCIgraphData' as NCIgraphData_1.9.0.zip
* DONE (NCIgraphData)

NCIgraphData.Rcheck/examples_i386/NCIgraphData-Ex.timings:

nameusersystemelapsed
NCI.cyList 2.50 0.0816.14
reactome.cyList0.670.080.74

NCIgraphData.Rcheck/examples_x64/NCIgraphData-Ex.timings:

nameusersystemelapsed
NCI.cyList2.820.063.20
reactome.cyList0.700.010.72