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BioC experimental data: CHECK report for GSVAdata on zin1

This page was generated on 2016-09-17 20:14:56 -0700 (Sat, 17 Sep 2016).

Package 126/304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSVAdata 1.9.0
Robert Castelo
Snapshot Date: 2016-09-17 09:20:18 -0700 (Sat, 17 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/GSVAdata
Last Changed Rev: 3763 / Revision: 3889
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: GSVAdata
Version: 1.9.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings GSVAdata_1.9.0.tar.gz
StartedAt: 2016-09-17 11:46:14 -0700 (Sat, 17 Sep 2016)
EndedAt: 2016-09-17 11:46:57 -0700 (Sat, 17 Sep 2016)
EllapsedTime: 43.8 seconds
RetCode: 0
Status:  OK 
CheckDir: GSVAdata.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings GSVAdata_1.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/GSVAdata.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSVAdata/DESCRIPTION’ ... OK
* this is package ‘GSVAdata’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSVAdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.8Mb
  sub-directories of 1Mb or more:
    data  12.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/GSVAdata.Rcheck/00check.log’
for details.


GSVAdata.Rcheck/00install.out:

* installing *source* package ‘GSVAdata’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (GSVAdata)

GSVAdata.Rcheck/GSVAdata-Ex.timings:

nameusersystemelapsed
annotEntrez2202120.0640.0240.087
brainTxDbSets0.0040.0000.004
c2BroadSets1.9520.1562.160
commonPickrellHuang0.6320.1680.802
gbm_VerhaakEtAl0.4480.0080.455
genderGenesEntrez0.0040.0000.001
leukemia0.3160.0000.316