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BioC 3.4: INSTALL report for genefilter on moscato1

This page was generated on 2016-09-21 03:41:07 -0700 (Wed, 21 Sep 2016).

Package 468/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genefilter 1.55.2
Bioconductor Package Maintainer
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefilter
Last Changed Rev: 117512 / Revision: 121152
Last Changed Date: 2016-05-15 13:14:22 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: genefilter
Version: 1.55.2
Command: rm -rf genefilter.buildbin-libdir && mkdir genefilter.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/genefilter_1.55.2.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=genefilter.buildbin-libdir --merge-multiarch genefilter_1.55.2.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL genefilter_1.55.2.zip && rm genefilter_1.55.2.tar.gz genefilter_1.55.2.zip
StartedAt: 2016-09-19 20:35:59 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:36:43 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 42.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf genefilter.buildbin-libdir && mkdir genefilter.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/genefilter_1.55.2.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=genefilter.buildbin-libdir --merge-multiarch genefilter_1.55.2.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL genefilter_1.55.2.zip  && rm genefilter_1.55.2.tar.gz genefilter_1.55.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  123k  100  123k    0     0  7873k      0 --:--:-- --:--:-- --:--:-- 10.0M

install for i386

* installing *source* package 'genefilter' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c half_range_mode.cpp -o half_range_mode.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c nd.c -o nd.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC':
pAUC.c:140:13: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
     if(rows != INTEGER(dimSens)[1] | columns != INTEGER(dimSens)[0])
             ^
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rowPAUCs.c -o rowPAUCs.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rowttests.c -o rowttests.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c ttest.f -o ttest.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o genefilter.dll tmp.def half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -Lc:/local323/lib/i386 -Lc:/local323/lib -lgfortran -lm -lquadmath -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/genefilter.buildbin-libdir/genefilter/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'genefilter'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'genefilter' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c half_range_mode.cpp -o half_range_mode.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nd.c -o nd.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC':
pAUC.c:140:13: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
     if(rows != INTEGER(dimSens)[1] | columns != INTEGER(dimSens)[0])
             ^
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rowPAUCs.c -o rowPAUCs.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rowttests.c -o rowttests.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c ttest.f -o ttest.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o genefilter.dll tmp.def half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -Lc:/local323/lib/x64 -Lc:/local323/lib -lgfortran -lm -lquadmath -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/genefilter.buildbin-libdir/genefilter/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genefilter' as genefilter_1.55.2.zip
* DONE (genefilter)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'genefilter' successfully unpacked and MD5 sums checked