BioC experimental data: CHECK report for tweeDEseqCountData on moscato1

Package: tweeDEseqCountData

Version: 1.8.0

Command: rm -rf tweeDEseqCountData.buildbin-libdir tweeDEseqCountData.Rcheck && mkdir tweeDEseqCountData.buildbin-libdir tweeDEseqCountData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=tweeDEseqCountData.buildbin-libdir tweeDEseqCountData_1.8.0.tar.gz >tweeDEseqCountData.Rcheck\00install.out 2>&1 && cp tweeDEseqCountData.Rcheck\00install.out tweeDEseqCountData-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=tweeDEseqCountData.buildbin-libdir --install="check:tweeDEseqCountData-install.out" --force-multiarch --no-vignettes --timings tweeDEseqCountData_1.8.0.tar.gz

StartedAt: 2016-04-20 16:07:03 -0700 (Wed, 20 Apr 2016)

EndedAt: 2016-04-20 16:10:23 -0700 (Wed, 20 Apr 2016)

EllapsedTime: 200.7 seconds

RetCode: 0

Status:  OK

CheckDir: tweeDEseqCountData.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf tweeDEseqCountData.buildbin-libdir tweeDEseqCountData.Rcheck && mkdir tweeDEseqCountData.buildbin-libdir tweeDEseqCountData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=tweeDEseqCountData.buildbin-libdir tweeDEseqCountData_1.8.0.tar.gz >tweeDEseqCountData.Rcheck\00install.out 2>&1 && cp tweeDEseqCountData.Rcheck\00install.out tweeDEseqCountData-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=tweeDEseqCountData.buildbin-libdir --install="check:tweeDEseqCountData-install.out" --force-multiarch --no-vignettes --timings tweeDEseqCountData_1.8.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/tweeDEseqCountData.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'tweeDEseqCountData/DESCRIPTION' ... OK
* this is package 'tweeDEseqCountData' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tweeDEseqCountData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 41.3Mb
  sub-directories of 1Mb or more:
    data  41.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [30s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
cheung 0.52      0   21.48
** running examples for arch 'x64' ... [4s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/tweeDEseqCountData.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'tweeDEseqCountData' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'tweeDEseqCountData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tweeDEseqCountData' as tweeDEseqCountData_1.8.0.zip
* DONE (tweeDEseqCountData)

name	user	system	elapsed
annotEnsembl63	0.42	0.00	0.42
cheung	0.52	0.00	21.48
commonPickrell1Huang	0.94	0.02	0.95
genderGenes	0	0	0
hkGenes	0.01	0.00	4.25
montgomery	0.36	0.03	0.98
pickrell	0.50	0.01	0.52

name	user	system	elapsed
annotEnsembl63	0.50	0.02	0.53
cheung	0.32	0.00	0.32
commonPickrell1Huang	1.06	0.05	1.11
genderGenes	0.00	0.01	0.01
hkGenes	0	0	0
montgomery	0.34	0.00	0.35
pickrell	0.44	0.02	0.45