Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-11-14 11:37:28 -0500 (Tue, 14 Nov 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.2 (2023-10-31) -- "Eye Holes" | 4680 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4413 |
lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4432 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 441/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CoSIA 1.2.0 (landing page) Amanda D. Clark
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the CoSIA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoSIA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CoSIA |
Version: 1.2.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CoSIA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CoSIA_1.2.0.tar.gz |
StartedAt: 2023-11-13 19:19:51 -0500 (Mon, 13 Nov 2023) |
EndedAt: 2023-11-13 19:29:24 -0500 (Mon, 13 Nov 2023) |
EllapsedTime: 573.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CoSIA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CoSIA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CoSIA_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/CoSIA.Rcheck’ * using R version 4.3.2 Patched (2023-11-01 r85457) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CoSIA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CoSIA’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CoSIA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotCVGEx-CoSIAn-method 119.477 4.487 125.159 plotCVGEx 77.786 1.796 80.648 getGEx-CoSIAn-method 45.601 4.982 57.104 plotDSGEx 29.343 1.983 31.741 plotDSGEx-CoSIAn-method 25.488 0.781 26.818 getTissues 24.353 0.689 25.736 plotTissueGEx-CoSIAn-method 17.531 1.250 19.086 plotSpeciesGEx-CoSIAn-method 17.950 0.540 18.777 plotTissueGEx 16.347 0.304 16.963 plotSpeciesGEx 15.635 0.264 16.259 getGExMetrics 7.536 0.262 8.043 getGExMetrics-CoSIAn-method 7.266 0.222 7.816 getConversion-CoSIAn-method 5.083 0.135 5.234 getGEx 4.692 0.222 5.102 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CoSIA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CoSIA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘CoSIA’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoSIA)
CoSIA.Rcheck/CoSIA-Ex.timings
name | user | system | elapsed | |
CoSIA-constructor | 0.003 | 0.001 | 0.003 | |
getConversion-CoSIAn-method | 5.083 | 0.135 | 5.234 | |
getConversion | 2.583 | 0.069 | 2.660 | |
getGEx-CoSIAn-method | 45.601 | 4.982 | 57.104 | |
getGEx | 4.692 | 0.222 | 5.102 | |
getGExMetrics-CoSIAn-method | 7.266 | 0.222 | 7.816 | |
getGExMetrics | 7.536 | 0.262 | 8.043 | |
getTissues | 24.353 | 0.689 | 25.736 | |
plotCVGEx-CoSIAn-method | 119.477 | 4.487 | 125.159 | |
plotCVGEx | 77.786 | 1.796 | 80.648 | |
plotDSGEx-CoSIAn-method | 25.488 | 0.781 | 26.818 | |
plotDSGEx | 29.343 | 1.983 | 31.741 | |
plotSpeciesGEx-CoSIAn-method | 17.950 | 0.540 | 18.777 | |
plotSpeciesGEx | 15.635 | 0.264 | 16.259 | |
plotTissueGEx-CoSIAn-method | 17.531 | 1.250 | 19.086 | |
plotTissueGEx | 16.347 | 0.304 | 16.963 | |
viewCoSIAn-CoSIAn-method | 0.001 | 0.000 | 0.002 | |
viewCoSIAn | 0.001 | 0.000 | 0.002 | |