| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-11 12:06:41 -0400 (Mon, 11 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4323 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4136 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OmnipathR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1330/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.2.9 (landing page) Denes Turei
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: OmnipathR |
| Version: 3.2.9 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OmnipathR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings OmnipathR_3.2.9.tar.gz |
| StartedAt: 2022-04-11 00:05:42 -0400 (Mon, 11 Apr 2022) |
| EndedAt: 2022-04-11 00:13:51 -0400 (Mon, 11 Apr 2022) |
| EllapsedTime: 489.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: OmnipathR.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OmnipathR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings OmnipathR_3.2.9.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OmnipathR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OmnipathR' version '3.2.9'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OmnipathR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[2022-04-11 00:06:32] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-11 00:06:33] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-11 00:06:33] [TRACE] [OmnipathR] Cache locked: FALSE
get_connections: no visible binding for global variable 'description'
get_connections: no visible binding for global variable 'con_id'
Undefined global functions or variables:
con_id description
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'OmnipathR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: harmonizome_download
> ### Title: Downloads a Harmonizome network dataset
> ### Aliases: harmonizome_download
>
> ### ** Examples
>
> harmonizome_data <- harmonizome_download('phosphositeplus')
[2022-04-11 00:09:58] [INFO] [OmnipathR] Looking up in cache `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`: key=ec4187d2e3f788b67450a4af5586d74c65db7687, no version available.
[2022-04-11 00:09:58] [INFO] [OmnipathR] Created new version for cache record ec4187d2e3f788b67450a4af5586d74c65db7687: version 186.
[2022-04-11 00:09:58] [TRACE] [OmnipathR] Cache file path: C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/ec4187d2e3f788b67450a4af5586d74c65db7687-186.gz
[2022-04-11 00:09:58] [INFO] [OmnipathR] Retrieving URL: `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`
[2022-04-11 00:09:58] [TRACE] [OmnipathR] Attempt 1/3: `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`
Error in curl::curl_fetch_disk(url, x$path, handle = handle) :
schannel: next InitializeSecurityContext failed: SEC_E_ILLEGAL_MESSAGE (0x80090326) - This error usually occurs when a fatal SSL/TLS alert is received (e.g. handshake failed).
Calls: harmonizome_download ... request_fetch -> request_fetch.write_disk -> <Anonymous>
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'OmnipathR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: harmonizome_download
> ### Title: Downloads a Harmonizome network dataset
> ### Aliases: harmonizome_download
>
> ### ** Examples
>
> harmonizome_data <- harmonizome_download('phosphositeplus')
[2022-04-11 00:12:34] [INFO] [OmnipathR] Looking up in cache `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`: key=ec4187d2e3f788b67450a4af5586d74c65db7687, no version available.
[2022-04-11 00:12:34] [INFO] [OmnipathR] Created new version for cache record ec4187d2e3f788b67450a4af5586d74c65db7687: version 187.
[2022-04-11 00:12:34] [TRACE] [OmnipathR] Cache file path: C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/ec4187d2e3f788b67450a4af5586d74c65db7687-187.gz
[2022-04-11 00:12:34] [INFO] [OmnipathR] Retrieving URL: `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`
[2022-04-11 00:12:34] [TRACE] [OmnipathR] Attempt 1/3: `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`
Error in curl::curl_fetch_disk(url, x$path, handle = handle) :
schannel: next InitializeSecurityContext failed: SEC_E_ILLEGAL_MESSAGE (0x80090326) - This error usually occurs when a fatal SSL/TLS alert is received (e.g. handshake failed).
Calls: harmonizome_download ... request_fetch -> request_fetch.write_disk -> <Anonymous>
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.Rcheck/00check.log'
for details.
OmnipathR.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OmnipathR_3.2.9.tar.gz && rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmnipathR.buildbin-libdir OmnipathR_3.2.9.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OmnipathR_3.2.9.zip && rm OmnipathR_3.2.9.tar.gz OmnipathR_3.2.9.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
21 5777k 21 1254k 0 0 1203k 0 0:00:04 0:00:01 0:00:03 1203k
60 5777k 60 3482k 0 0 1707k 0 0:00:03 0:00:02 0:00:01 1707k
100 5777k 100 5777k 0 0 2076k 0 0:00:02 0:00:02 --:--:-- 2076k
install for i386
* installing *source* package 'OmnipathR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OmnipathR'
finding HTML links ... done
OmnipathR html
all_uniprots html
ancestors html
annotated_network html
annotation_categories html
bioplex1 html
bioplex2 html
bioplex3 html
bioplex_all html
bioplex_hct116_1 html
bma_motif_es html
bma_motif_vs html
consensuspathdb_download html
consensuspathdb_raw_table html
descendants html
dot-omnipath_options_defaults html
enzsub_graph html
evex_download html
filter_by_resource html
filter_intercell_network html
find_all_paths html
get_annotation_resources html
get_complex_genes html
get_complex_resources html
get_db html
get_enzsub_resources html
get_interaction_resources html
get_intercell_categories html
get_intercell_generic_categories html
get_intercell_resources html
get_ontology_db html
get_resources html
get_signed_ptms html
giant_component html
go_annot_download html
go_annot_slim html
go_ontology_download html
guide2pharma_download html
harmonizome_download html
hpo_download html
htridb_download html
import_all_interactions html
import_dorothea_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_tfregulons_interactions.html
import_intercell_network html
import_kinaseextra_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_KinaseExtra_Interactions.html
import_ligrecextra_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_LigrecExtra_Interactions.html
import_lncrna_mrna_interactions html
import_mirnatarget_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_miRNAtarget_Interactions.html
import_omnipath_annotations html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_Omnipath_annotations.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_annotations.html
import_omnipath_complexes html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_Omnipath_complexes.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_complexes.html
import_omnipath_enzsub html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_PTMS.html
import_omnipath_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_Omnipath_Interactions.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_Interactions.html
import_omnipath_intercell html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_Omnipath_intercell.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_intercell.html
import_pathwayextra_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_PathwayExtra_Interactions.html
import_post_translational_interactions
html
import_tf_mirna_interactions html
import_tf_target_interactions html
import_transcriptional_interactions html
inbiomap_download html
inbiomap_raw html
interaction_graph html
intercell_categories html
intercell_consensus_filter html
is_ontology_id html
kegg_info html
kegg_open html
kegg_pathway_annotations html
kegg_pathway_download html
kegg_pathway_list html
kegg_pathways_download html
kegg_picture html
kegg_process html
load_db html
nichenet_build_model html
nichenet_expression_data html
nichenet_gr_network html
nichenet_gr_network_evex html
nichenet_gr_network_harmonizome html
nichenet_gr_network_htridb html
nichenet_gr_network_omnipath html
nichenet_gr_network_pathwaycommons html
nichenet_gr_network_regnetwork html
nichenet_gr_network_remap html
nichenet_gr_network_trrust html
nichenet_ligand_activities html
nichenet_ligand_target_links html
nichenet_ligand_target_matrix html
nichenet_lr_network html
nichenet_lr_network_guide2pharma html
nichenet_lr_network_omnipath html
nichenet_lr_network_ramilowski html
nichenet_main html
nichenet_networks html
nichenet_optimization html
nichenet_remove_orphan_ligands html
nichenet_results_dir html
nichenet_signaling_network html
nichenet_signaling_network_cpdb html
nichenet_signaling_network_evex html
nichenet_signaling_network_harmonizome
html
nichenet_signaling_network_inbiomap html
nichenet_signaling_network_omnipath html
nichenet_signaling_network_pathwaycommons
html
nichenet_signaling_network_vinayagam html
nichenet_test html
nichenet_workarounds html
obo_parser html
omnipath_cache_autoclean html
omnipath_cache_clean html
omnipath_cache_clean_db html
omnipath_cache_download_ready html
omnipath_cache_filter_versions html
omnipath_cache_get html
omnipath_cache_key html
omnipath_cache_latest_or_new html
omnipath_cache_latest_version html
omnipath_cache_load html
omnipath_cache_move_in html
omnipath_cache_remove html
omnipath_cache_save html
omnipath_cache_search html
omnipath_cache_set_ext html
omnipath_cache_update_status html
omnipath_cache_wipe html
omnipath_get_config_path html
omnipath_load_config html
omnipath_log html
omnipath_logfile html
omnipath_msg html
omnipath_reset_config html
omnipath_save_config html
omnipath_set_cachedir html
omnipath_set_console_loglevel html
omnipath_set_logfile_loglevel html
omnipath_set_loglevel html
omnipath_show_db html
omnipath_unlock_cache_db html
ontology_ensure_id html
ontology_ensure_name html
ontology_name_id html
pathwaycommons_download html
pivot_annotations html
preppi_download html
preppi_filter html
print_bma_motif_es html
print_bma_motif_vs html
print_interactions html
print_path_es html
print_path_vs html
ramilowski_download html
regnetwork_directions html
regnetwork_download html
relations_list_to_table html
relations_table_to_graph html
relations_table_to_list html
remap_dorothea_download html
remap_filtered html
remap_tf_target_download html
resources_colname html
simplify_intercell_network html
swap_relations html
tfcensus_download html
translate_ids html
trrust_download html
uniprot_full_id_mapping_table html
uniprot_id_mapping_table html
unique_intercell_network html
vinayagam_download html
walk_ontology_tree html
zenodo_download html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2022-04-10 06:26:45] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-10 06:26:45] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-10 06:26:45] [TRACE] [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2022-04-10 06:26:48] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-10 06:26:48] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-10 06:26:48] [TRACE] [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OmnipathR' ...
** testing if installed package can be loaded
[2022-04-10 06:27:24] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-10 06:27:29] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-10 06:27:29] [TRACE] [OmnipathR] Cache locked: FALSE
* MD5 sums
packaged installation of 'OmnipathR' as OmnipathR_3.2.9.zip
* DONE (OmnipathR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'OmnipathR' successfully unpacked and MD5 sums checked
|
OmnipathR.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #!/usr/bin/env Rscript
>
> #
> # This file is part of the `OmnipathR` R package
> #
> # Copyright
> # 2018-2021
> # Saez Lab, Uniklinik RWTH Aachen, Heidelberg University
> #
> # File author(s): Alberto Valdeolivas
> # Dénes Türei (turei.denes@gmail.com)
> # Attila Gábor
> #
> # Distributed under the MIT (Expat) License.
> # See accompanying file `LICENSE` or find a copy at
> # https://directory.fsf.org/wiki/License:Expat
> #
> # Website: https://saezlab.github.io/omnipathr
> # Git repo: https://github.com/saezlab/OmnipathR
> #
>
>
> library(testthat)
> library(OmnipathR)
[2022-04-11 00:12:38] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-11 00:12:38] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-11 00:12:38] [TRACE] [OmnipathR] Cache locked: FALSE
>
> test_check('OmnipathR')
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
>
> proc.time()
user system elapsed
8.70 0.56 38.93
|
OmnipathR.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #!/usr/bin/env Rscript
>
> #
> # This file is part of the `OmnipathR` R package
> #
> # Copyright
> # 2018-2021
> # Saez Lab, Uniklinik RWTH Aachen, Heidelberg University
> #
> # File author(s): Alberto Valdeolivas
> # Dénes Türei (turei.denes@gmail.com)
> # Attila Gábor
> #
> # Distributed under the MIT (Expat) License.
> # See accompanying file `LICENSE` or find a copy at
> # https://directory.fsf.org/wiki/License:Expat
> #
> # Website: https://saezlab.github.io/omnipathr
> # Git repo: https://github.com/saezlab/OmnipathR
> #
>
>
> library(testthat)
> library(OmnipathR)
[2022-04-11 00:13:16] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-11 00:13:17] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-11 00:13:17] [TRACE] [OmnipathR] Cache locked: FALSE
>
> test_check('OmnipathR')
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
>
> proc.time()
user system elapsed
8.32 0.37 24.28
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OmnipathR.Rcheck/examples_i386/OmnipathR-Ex.timings
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OmnipathR.Rcheck/examples_x64/OmnipathR-Ex.timings
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