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This page was generated on 2021-05-06 12:32:26 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the NanoMethViz package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1197/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
NanoMethViz 1.0.0 (landing page) Shian Su
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: NanoMethViz |
Version: 1.0.0 |
Command: rm -rf NanoMethViz.buildbin-libdir && mkdir NanoMethViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoMethViz.buildbin-libdir NanoMethViz_1.0.0.tar.gz |
StartedAt: 2021-05-06 09:37:25 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 09:38:50 -0400 (Thu, 06 May 2021) |
EllapsedTime: 84.7 seconds |
RetCode: 0 |
Status: OK |
PackageFile: NanoMethViz_1.0.0.zip |
PackageFileSize: 3.199 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf NanoMethViz.buildbin-libdir && mkdir NanoMethViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoMethViz.buildbin-libdir NanoMethViz_1.0.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'NanoMethViz' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o utils.cpp: In function 'std::__cxx11::string timestamp()': utils.cpp:16:42: warning: unknown conversion type character 'F' in format [-Wformat=] strftime(time_str, sizeof(time_str), "%F %T", localtime(&t)); ^~~~~~~ utils.cpp:16:42: warning: unknown conversion type character 'T' in format [-Wformat=] C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LC:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/NanoMethViz.buildbin-libdir/00LOCK-NanoMethViz/00new/NanoMethViz/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'NanoMethViz' finding HTML links ... done NanoMethResult-class html NanoMethViz-package html bsseq_to_edger html bsseq_to_log_methy_ratio html convert_methy_format html create_tabix_file html exons html get_exons_homo_sapiens html get_exons_mus_musculus html load_example_nanomethresult html methy html methy_col_names html methy_to_bsseq html plot_agg_regions html plot_agg_regions_sample_grouped html plot_gene html plot_grange html plot_region html query_exons html query_methy html raw_methy_to_tabix html samples html sort_methy_file html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'NanoMethViz' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o utils.cpp: In function 'std::__cxx11::string timestamp()': utils.cpp:16:42: warning: unknown conversion type character 'F' in format [-Wformat=] strftime(time_str, sizeof(time_str), "%F %T", localtime(&t)); ^~~~~~~ utils.cpp:16:42: warning: unknown conversion type character 'T' in format [-Wformat=] C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LC:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/NanoMethViz.buildbin-libdir/NanoMethViz/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'NanoMethViz' as NanoMethViz_1.0.0.zip * DONE (NanoMethViz)