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Package 30/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
bgx 1.2.0 Ernest Turro Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | [ OK ] |
Package: bgx |
Version: 1.2.0 |
Command: /Users/biocbuild/BBS/utils/build-universal.sh bgx_1.2.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R bgx.buildbin-libdir |
RetCode: 0 |
Time: 43.6 seconds |
Status: OK |
PackageFile: bgx_1.2.0.tgz |
INSTALLATION WITH 'R CMD INSTALL bgx_1.2.0.tar.gz' * Installing to library 'bgx.buildbin-libdir' * Installing *source* package 'bgx' ... checking for gcc... gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 accepts -g... yes checking for gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 option to accept ISO C89... none needed checking for C compiler vendor... gnu checking whether C compiler accepts -ffast-math... yes checking whether C compiler accepts -O3... yes checking build system type... i386-apple-darwin8.10.2 checking host system type... i386-apple-darwin8.10.2 checking for gcc architecture flag... checking for x86 cpuid 0 output... unknown checking for x86 cpuid 1 output... unknown checking for gcc architecture flag... unknown checking for gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 option to accept ISO C99... none needed checking for main in -lm... yes checking for an ANSI C-conforming const... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs ** arch - i386 g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I ../boostIncl -msse3 -fPIC -g -O2 -Wall -march=nocona -ffast-math -O3 -DUSING_R -c bgx.cc -o bgx.o g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I ../boostIncl -msse3 -fPIC -g -O2 -Wall -march=nocona -ffast-math -O3 -DUSING_R -c bgx_frontend.cc -o bgx_frontend.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I ../boostIncl -msse3 -fPIC -g -O2 -Wall -march=nocona -g -O2 -ffast-math -O3 -c qnorm.c -o qnorm.o g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I ../boostIncl -msse3 -fPIC -g -O2 -Wall -march=nocona -ffast-math -O3 -DUSING_R -c rundir.cc -o rundir.o g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I ../boostIncl -msse3 -fPIC -g -O2 -Wall -march=nocona -ffast-math -O3 -DUSING_R -c sokal.cc -o sokal.o g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bgx.so bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -lm -F/Library/Frameworks/R.framework/.. -framework R ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: gcrma Loading required package: matchprobes Loading required package: splines ** help >>> Building/Updating help pages for package 'bgx' Formats: text html latex example analysis.bgx text html latex example bgx text html latex example mcmc.bgx text html latex example readOutput.bgx text html latex example saveAffinityPlot.bgx text html latex example setupVars.bgx text html latex example ** building package indices ... * DONE (bgx) INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --libs-only bgx_1.2.0.tar.gz' * Installing to library 'bgx.buildbin-libdir' * Installing *source* package 'bgx' ... checking for gcc... gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 accepts -g... yes checking for gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 option to accept ISO C89... none needed checking for C compiler vendor... gnu checking whether C compiler accepts -ffast-math... yes checking whether C compiler accepts -O3... yes checking build system type... i386-apple-darwin8.10.2 checking host system type... i386-apple-darwin8.10.2 checking for gcc architecture flag... checking for x86 cpuid 0 output... unknown checking for x86 cpuid 1 output... unknown checking for gcc architecture flag... unknown checking for gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 option to accept ISO C99... none needed checking for main in -lm... yes checking for an ANSI C-conforming const... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs ** arch - ppc g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I ../boostIncl -I/usr/local/include -fPIC -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx.cc -o bgx.o g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I ../boostIncl -I/usr/local/include -fPIC -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx_frontend.cc -o bgx_frontend.o gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I ../boostIncl -I/usr/local/include -fPIC -g -O2 -Wall -g -O2 -ffast-math -O3 -c qnorm.c -o qnorm.o g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I ../boostIncl -I/usr/local/include -fPIC -g -O2 -Wall -ffast-math -O3 -DUSING_R -c rundir.cc -o rundir.o g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I ../boostIncl -I/usr/local/include -fPIC -g -O2 -Wall -ffast-math -O3 -DUSING_R -c sokal.cc -o sokal.o g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bgx.so bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -lm -F/Library/Frameworks/R.framework/.. -framework R * DONE (bgx)