Back to the "Multiple platform build/check report"
| IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
| Package 5/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
affxparser1.9.4Kasper Daniel HansenLast Changed Date: 2007-08-25 23:19:09 -0700 Last Changed Rev: 26652 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ ERROR ] | ERROR | |
| pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
| Package: affxparser |
| Version: 1.9.4 |
| Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check affxparser_1.9.4.tar.gz |
| RetCode: 1 |
| Time: 44.0 seconds |
| Status: ERROR |
| CheckDir: affxparser.Rcheck |
| Warnings: NA |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/affxparser.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'affxparser/DESCRIPTION' ... OK * this is package 'affxparser' version '1.9.4' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'affxparser' can be installed ... ERROR Installation failed. See 'E:/biocbld/bbs-2.1-bioc/meat/affxparser.Rcheck/00install.out' for details.
affxparser.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/affxparser.Rcheck
---------- Making package affxparser ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making R_affx_bpmap_parser.d from R_affx_bpmap_parser.cpp
making R_affx_cdf_extras.d from R_affx_cdf_extras.cpp
making R_affx_cdf_parser.d from R_affx_cdf_parser.cpp
making R_affx_cel_parser.d from R_affx_cel_parser.cpp
making R_affx_test_bpmap_cmdline.d from R_affx_test_bpmap_cmdline.cpp
making R_affx_test_cdfwriter_cmdline.d from R_affx_test_cdfwriter_cmdline.cpp
making R_affx_test_celwriter_cmdline.d from R_affx_test_celwriter_cmdline.cpp
making R_affx_test_cmd_line.d from R_affx_test_cmd_line.cpp
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void affymetrix_calvin_io::CDFProbeSetInformation::SetDataGroup(affymetrix_calvin_io::DataGroup&)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/CELData.h:35: warning: ignoring #pragma warning
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetIntensities(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:427: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp:431: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetStdev(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:445: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetNumPixels(int32_t, int32_t, Int16Vector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:459: warning: comparison between signed and unsigned integer expressions
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const affymetrix_calvin_io::DataSetHeader*, std::vector<affymetrix_calvin_io::DataSetHeader, std::allocator<affymetrix_calvin_io::DataSetHeader> > >, _ForwardIterator = affymetrix_calvin_io::DataSetHeader*]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator<affymetrix_calvin_parameter::ParameterNameValueType>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator<affymetrix_calvin_io::ColumnInfo>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator<affymetrix_calvin_parameter::ParameterNameValueType>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator<affymetrix_calvin_io::ColumnInfo>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator<std::string>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::wstring, _Alloc = std::allocator<std::wstring>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator<affymetrix_calvin_parameter::ParameterNameValueType>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const affymetrix_calvin_io::GenericDataHeader*, std::vector<affymetrix_calvin_io::GenericDataHeader, std::allocator<affymetrix_calvin_io::GenericDataHeader> > >, _ForwardIterator = affymetrix_calvin_io::GenericDataHeader*]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::GenericDataHeader, _Alloc = std::allocator<affymetrix_calvin_io::GenericDataHeader>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataGroupHeader::DataGroupHeader(const affymetrix_calvin_io::DataGroupHeader&)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator<affymetrix_calvin_io::ColumnInfo>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::DataSetHeader, _Alloc = std::allocator<affymetrix_calvin_io::DataSetHeader>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:22:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:22:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator<affymetrix_calvin_parameter::ParameterNameValueType>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::GenericDataHeader, _Alloc = std::allocator<affymetrix_calvin_io::GenericDataHeader>]':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::GenericDataHeader::GenericDataHeader(const affymetrix_calvin_io::GenericDataHeader&)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:28,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/CELData.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:23:
fusion_sdk/calvin_files/parsers/src/CelFileReader.h:35: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `virtual void affymetrix_fusion_io::CalvinCELDataAdapter::GetParameters(affymetrix_fusion_io::FusionTagValuePairTypeList&)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp:21:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:22:
fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:23:
fusion_sdk/calvin_files/data/src/CELData.h:35: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `virtual void affymetrix_fusion_io::GCOSCELDataAdapter::GetParameters(affymetrix_fusion_io::FusionTagValuePairTypeList&)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
In file included from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:20:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:24: warning: ignoring #pragma warning
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType::operator=(const affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType&)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CELData.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/CelFileReader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:31: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:27: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:31: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:35: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:29: warning: ignoring #pragma warning
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In function `void InitializeRandomNumberGenerator()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:50: warning: cast from pointer to integer of different size
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In constructor `affymetrix_calvin_utilities::AffymetrixGuid::AffymetrixGuid()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:66: warning: unused variable 'nResult'
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
fusion_sdk/calvin_files/utils/src/DateTime.cpp:33: warning: ignoring #pragma warning
fusion_sdk/calvin_files/utils/src/DateTime.cpp: In static member function `static affymetrix_calvin_utilities::DateTime affymetrix_calvin_utilities::DateTime::Parse(std::wstring)':
fusion_sdk/calvin_files/utils/src/DateTime.cpp:160: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/utils/src/DateTime.cpp:172: warning: comparison between signed and unsigned integer expressions
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In static member function `static std::list<std::string, std::allocator<std::string> > affymetrix_calvin_utilities::FileUtils::ListFiles(const char*, const char*)':
c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
fusion_sdk/calvin_files/utils/src/StringUtils.cpp:26: warning: ignoring #pragma warning
fusion_sdk/calvin_files/utils/src/StringUtils.cpp: In static member function `static std::wstring affymetrix_calvin_utilities::StringUtils::ToString(int, int, wchar_t)':
fusion_sdk/calvin_files/utils/src/StringUtils.cpp:139: error: `wostringstream' is not a member of `std'
fusion_sdk/calvin_files/utils/src/StringUtils.cpp:139: error: expected `;' before "str"
fusion_sdk/calvin_files/utils/src/StringUtils.cpp:140: error: `str' was not declared in this scope
make[3]: *** [fusion_sdk/calvin_files/utils/src/StringUtils.o] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-affxparser] Error 2
*** Installation of affxparser failed ***
Removing 'E:/biocbld/bbs-2.1-bioc/meat/affxparser.Rcheck/affxparser'