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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 209/247HostnameOSArchBUILDCHECKBUILD BIN

RWebServices

1.1.2

Biocore Team c/o BioC user list
Last Changed Date: 2007-08-20 09:33:20 -0700
Last Changed Rev: 26527
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64 [ ERROR ]skippedskipped
pitt Mac OS X (10.4.10) i386  ERROR skippedskipped
Package: RWebServices
Version: 1.1.2
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build RWebServices
RetCode: 1
Time: 6.7 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'RWebServices/DESCRIPTION' ... OK
* preparing 'RWebServices':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst322057427


---------- Making package RWebServices ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making RWebServicesConverters.d from RWebServicesConverters.c
making init.d from init.c
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c RWebServicesConverters.c -o RWebServicesConverters.o
RWebServicesConverters.c:1:17: jni.h: No such file or directory
RWebServicesConverters.c: In function `RCharScalar_JavaString':
RWebServicesConverters.c:26: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:26: error: (Each undeclared identifier is reported only once
RWebServicesConverters.c:26: error: for each function it appears in.)
RWebServicesConverters.c:26: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:28: error: `jobject' undeclared (first use in this function)
RWebServicesConverters.c:28: error: syntax error before "value"
RWebServicesConverters.c:34: error: `value' undeclared (first use in this function)
RWebServicesConverters.c: In function `RIntegerScalar_JavaInteger':
RWebServicesConverters.c:44: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:44: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:45: error: `jclass' undeclared (first use in this function)
RWebServicesConverters.c:45: error: syntax error before "thisClass"
RWebServicesConverters.c:46: error: `jmethodID' undeclared (first use in this function)
RWebServicesConverters.c:47: error: `jobject' undeclared (first use in this function)
RWebServicesConverters.c:50: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:50: error: `thisClass' undeclared (first use in this function)
RWebServicesConverters.c:50: error: `thisConstructor' undeclared (first use in this function)
RWebServicesConverters.c: In function `RNumericScalar_JavaDouble':
RWebServicesConverters.c:61: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:61: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:62: error: `jclass' undeclared (first use in this function)
RWebServicesConverters.c:62: error: syntax error before "thisClass"
RWebServicesConverters.c:63: error: `jmethodID' undeclared (first use in this function)
RWebServicesConverters.c:64: error: `jobject' undeclared (first use in this function)
RWebServicesConverters.c:67: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:67: error: `thisClass' undeclared (first use in this function)
RWebServicesConverters.c:67: error: `thisConstructor' undeclared (first use in this function)
RWebServicesConverters.c: In function `RLogicalScalar_JavaBoolean':
RWebServicesConverters.c:78: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:78: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:79: error: `jclass' undeclared (first use in this function)
RWebServicesConverters.c:79: error: syntax error before "thisClass"
RWebServicesConverters.c:80: error: `jmethodID' undeclared (first use in this function)
RWebServicesConverters.c:81: error: `jobject' undeclared (first use in this function)
RWebServicesConverters.c:84: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:84: error: `thisClass' undeclared (first use in this function)
RWebServicesConverters.c:84: error: `thisConstructor' undeclared (first use in this function)
RWebServicesConverters.c: In function `RCharVector_JavaStringArray':
RWebServicesConverters.c:95: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:95: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:97: error: `jstring' undeclared (first use in this function)
RWebServicesConverters.c:97: error: syntax error before "str"
RWebServicesConverters.c:98: error: `jobject' undeclared (first use in this function)
RWebServicesConverters.c:101: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:103: error: `str' undeclared (first use in this function)
RWebServicesConverters.c: In function `RList_JavaObjectArray':
RWebServicesConverters.c:116: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:116: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:118: error: `jobject' undeclared (first use in this function)
RWebServicesConverters.c:118: error: syntax error before "ele"
RWebServicesConverters.c:122: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:124: error: `ele' undeclared (first use in this function)
RWebServicesConverters.c: In function `RIntegerVector_JavaIntArray':
RWebServicesConverters.c:137: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:137: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:139: error: `jintArray' undeclared (first use in this function)
RWebServicesConverters.c:139: error: syntax error before "value"
RWebServicesConverters.c:140: error: `jint' undeclared (first use in this function)
RWebServicesConverters.c:140: error: `els' undeclared (first use in this function)
RWebServicesConverters.c:141: error: `jboolean' undeclared (first use in this function)
RWebServicesConverters.c:141: error: syntax error before "isCopy"
RWebServicesConverters.c:144: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:145: error: `isCopy' undeclared (first use in this function)
RWebServicesConverters.c: In function `RNumericVector_JavaDoubleArray':
RWebServicesConverters.c:159: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:159: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:161: error: `jdoubleArray' undeclared (first use in this function)
RWebServicesConverters.c:161: error: syntax error before "value"
RWebServicesConverters.c:162: error: `jdouble' undeclared (first use in this function)
RWebServicesConverters.c:162: error: `els' undeclared (first use in this function)
RWebServicesConverters.c:163: error: `jboolean' undeclared (first use in this function)
RWebServicesConverters.c:163: error: syntax error before "isCopy"
RWebServicesConverters.c:166: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:167: error: `isCopy' undeclared (first use in this function)
RWebServicesConverters.c: In function `RLogicalVector_JavaBooleanArray':
RWebServicesConverters.c:181: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:181: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:183: error: `jbooleanArray' undeclared (first use in this function)
RWebServicesConverters.c:183: error: syntax error before "value"
RWebServicesConverters.c:184: error: `jboolean' undeclared (first use in this function)
RWebServicesConverters.c:184: error: `els' undeclared (first use in this function)
RWebServicesConverters.c:185: error: syntax error before "isCopy"
RWebServicesConverters.c:188: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:189: error: `isCopy' undeclared (first use in this function)
RWebServicesConverters.c: In function `RRawVector_JavaByteArray':
RWebServicesConverters.c:203: error: `JNIEnv' undeclared (first use in this function)
RWebServicesConverters.c:203: error: `env' undeclared (first use in this function)
RWebServicesConverters.c:205: error: `jbyteArray' undeclared (first use in this function)
RWebServicesConverters.c:205: error: syntax error before "value"
RWebServicesConverters.c:206: error: `jbyte' undeclared (first use in this function)
RWebServicesConverters.c:206: error: `els' undeclared (first use in this function)
RWebServicesConverters.c:207: error: `jboolean' undeclared (first use in this function)
RWebServicesConverters.c:207: error: syntax error before "isCopy"
RWebServicesConverters.c:210: error: `value' undeclared (first use in this function)
RWebServicesConverters.c:211: error: `isCopy' undeclared (first use in this function)
make[3]: *** [RWebServicesConverters.o] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-RWebServices] Error 2
*** Installation of RWebServices failed ***

Removing 'E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst322057427/RWebServices'
 ERROR
Installation failed.
Removing 'E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst322057427'