Package: Harshlight

Version: 1.5.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check Harshlight_1.5.0.tar.gz

RetCode: 0

Time: 48.3 seconds

Status: WARNINGS

CheckDir: Harshlight.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/Harshlight.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'Harshlight/DESCRIPTION' ... OK
* this is package 'Harshlight' version '1.5.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Harshlight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Harshlight: no visible binding for global variable 'sim'
Harshlight: no visible binding for global variable 'sim.int'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data sets with usage in documentation object 'sim' but not in code:
  sim_n4_534 sim_n4_640 sim_n4_712 sim_n8_534 sim_n8_640 sim_n8_712
  sim_4_534 sim_4_640 sim_4_712 sim_8_534 sim_8_640 sim_8_712

* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Harshlight-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Harshlight-manual.tex ... OK
* checking Harshlight-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.1-bioc/meat/Harshlight.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/Harshlight.Rcheck


---------- Making package Harshlight ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making Harshlight.d from Harshlight.c
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c Harshlight.c -o Harshlight.o
windres -I e:/biocbld/bbs-2.1-bioc/R/include  -i Harshlight_res.rc -o Harshlight_res.o
gcc  -shared -s  -o Harshlight.dll Harshlight.def Harshlight.o Harshlight_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'Harshlight'
     Formats: text html latex example chm 
  HarshComp                         text    html    latex           chm
  HarshExt                          text    html    latex           chm
  Harshlight                        text    html    latex   example chm
  sim                               text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\Harshlight.Rcheck\00_pkg_src\Harshlight\chm\Harshlight.chm


Compile time: 0 minutes, 0 seconds
5	Topics
11	Local links
3	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\Harshlight.Rcheck\00_pkg_src\Harshlight\chm\Harshlight.chm, 24,761 bytes
Compression decreased file by 2,014 bytes.
  preparing package Harshlight for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
  adding MD5 sums

* DONE (Harshlight)