Package: GOstats

Version: 2.3.15

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build GOstats

RetCode: 1

Time: 12.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'GOstats/DESCRIPTION' ... OK
* preparing 'GOstats':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'GOstats' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'GOstats'
     Formats: text html latex example 
  GOHyperG                          text    html    latex   example
  GOHyperGResult-class              text    html    latex
  GOLeaves                          text    html    latex   example
  GOstats-defunct                   text    html    latex
  GOstats-package                   text    html    latex
  Ndists                            text    html    latex   example
  compCorrGraph                     text    html    latex   example
  compGdist                         text    html    latex   example
  hyperG2Affy                       text    html    latex   example
  hyperGTest                        text    html    latex
  hyperGtable                       text    html    latex   example
  idx2dimnames                      text    html    latex   example
  makeGOGraph                       text    html    latex   example
  notConn                           text    html    latex   example
  oneGOGraph                        text    html    latex   example
  probeSetSummary                   text    html    latex
  shortestPath                      text    html    latex   example
  simLL                             text    html    latex   example
  termGraphs                        text    html    latex
  triadCensus                       text    html    latex   example
** building package indices ...
* DONE (GOstats)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite

Attaching package: 'GO.db'


	The following object(s) are masked from package:hgu95av2.db :

	 db_conn,
	 db_file 

Loading required package: survival
Loading required package: splines
Loading required package: graph
Loading required package: RBGL
Loading required package: Category

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 


Error: processing vignette 'GOstatsHyperG.Rnw' failed with diagnostics:
 chunk 6 (label=nsFiltering-noGO) 
Error in sqliteExecStatement(con, statement, bind.data) : 
  RS-DBI driver: (error in statement: near ",": syntax error)
In addition: Warning message:
In if (!is.na(L2Rlink@tagname)) L2Rlink@tagname :
  the condition has length > 1 and only the first element will be used
Execution halted