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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 63/247HostnameOSArchBUILDCHECKBUILD BIN

DNAcopy

1.11.1

Venkatraman E. Seshan
Last Changed Date: 2007-07-24 06:06:50 -0700
Last Changed Rev: 25954
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK  WARNINGS [ OK ]
Package: DNAcopy
Version: 1.11.1
Command: /Users/biocbuild/BBS/utils/build-universal.sh DNAcopy_1.11.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R DNAcopy.buildbin-libdir
RetCode: 0
Time: 7.6 seconds
Status: OK
PackageFile: DNAcopy_1.11.1.tgz

Command output

                    INSTALLATION WITH 'R CMD INSTALL DNAcopy_1.11.1.tar.gz'

* Installing to library 'DNAcopy.buildbin-libdir'
* Installing *source* package 'DNAcopy' ...
** libs
** arch - i386
gfortran-4.0 -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -march=nocona -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:175: warning: 'wtmxi' may be used uninitialized in this function
changepoints.f:175: warning: 'wtmxj' may be used uninitialized in this function
changepoints.f:175: warning: 'sxmxi' may be used uninitialized in this function
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c flchoose.c -o flchoose.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c fphyper.c -o fphyper.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c fpnorm.c -o fpnorm.o
gfortran-4.0 -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -march=nocona -c getbdry.f -o getbdry.o
getbdry.f:6.15:

      integer i, j, k, l                                                
              1
Warning: Unused variable i declared at (1)
getbdry.f:6.21:

      integer i, j, k, l                                                
                    1
Warning: Unused variable k declared at (1)
gfortran-4.0 -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -march=nocona -c hybcpt.f -o hybcpt.o
gfortran-4.0 -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -march=nocona -c prune.f -o prune.o
prune.f:100.24:

      subroutine combn(n, r, nmr, loc, rleft)                           
                       1
Warning: Unused variable n declared at (1)
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c rshared.c -o rshared.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o  -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gfortran-4.0 -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:175: warning: 'wtmxi' may be used uninitialized in this function
changepoints.f:175: warning: 'wtmxj' may be used uninitialized in this function
changepoints.f:175: warning: 'sxmxi' may be used uninitialized in this function
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.0 -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
getbdry.f:6.15:

      integer i, j, k, l                                                
              1
Warning: Unused variable i declared at (1)
getbdry.f:6.21:

      integer i, j, k, l                                                
                    1
Warning: Unused variable k declared at (1)
gfortran-4.0 -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -c hybcpt.f -o hybcpt.o
gfortran-4.0 -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
prune.f:100.24:

      subroutine combn(n, r, nmr, loc, rleft)                           
                       1
Warning: Unused variable n declared at (1)
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o  -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.1 -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** help
Note: unmatched right brace in 'segment' on or after line 60
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example 
  CNA                               text    html    latex   example
  DNAcopy-internal                  text    html    latex
  DNAcopy                           text    html    latex
  coriell                           text    html    latex
  cytoBand                          text    html    latex
  getbdry                           text    html    latex
  plot.DNAcopy                      text    html    latex   example
  segment                           text    html    latex   example
  smooth.CNA                        text    html    latex   example
  subset.CNA                        text    html    latex   example
  subset.DNAcopy                    text    html    latex
** building package indices ...
* DONE (DNAcopy)