Package: ABarray

Version: 1.5.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check ABarray_1.5.1.tar.gz

RetCode: 0

Time: 52.2 seconds

Status: WARNINGS

CheckDir: ABarray.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/ABarray.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-10 r42465)
* checking for file 'ABarray/DESCRIPTION' ... OK
* this is package 'ABarray' version '1.5.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ABarray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  tcltk
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ABarray: no visible binding for global variable 'colSn'
ABarrayGUI : getImputeFunc: no visible binding for global variable
  'knnRbtn'
getPantherMap: no visible binding for global variable 'panther'
Found possibly global 'T' or 'F' in the following functions:
  ABarray ABarrayGUI calcsn concord cvv cvvPlot doANOVA doLPE
  doPlotEset doPlotFCT hclusterPlot icpPlot imputeFlag mamaplot
  mvaPair2 qnNormalize snSummary
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ABarray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ABarray-manual.tex ... OK
* checking ABarray-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.1-bioc/meat/ABarray.Rcheck/00check.log
for details

* Installing *source* package 'ABarray' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: multtest
Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'ABarray'
     Formats: text html latex example 
  ABarray                           text    html    latex   example
  ABarrayGUI                        text    html    latex   example
  calcsn                            text    html    latex   example
  concord                           text    html    latex   example
  cvv                               text    html    latex   example
  cvvPlot                           text    html    latex   example
  doANOVA                           text    html    latex   example
  doLPE                             text    html    latex   example
  doPlotEset                        text    html    latex   example
  doPlotFCT                         text    html    latex   example
  doVennDiagram                     text    html    latex   example
  drawVennDiagram                   text    html    latex   example
  getMemberEset                     text    html    latex   example
  getPantherMap                     text    html    latex   example
  hclusterPlot                      text    html    latex   example
  icpPlot                           text    html    latex   example
  imputeFlag                        text    html    latex   example
  lpe.fdr.BH                        text    html    latex   example
  mamaplot                          text    html    latex   example
  matrixPlot                        text    html    latex   example
  mvaPair2                          text    html    latex   example
  panel.cor                         text    html    latex   example
  panel.scatter                     text    html    latex   example
  qnNormalize                       text    html    latex   example
  rgcolorsfunc                      text    html    latex   example
  savejpg                           text    html    latex   example
  scaleColorBar                     text    html    latex   example
  snSummary                         text    html    latex   example
** building package indices ...
* DONE (ABarray)