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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier |
Package 195/238 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
RMAGEML2.11.1Steffen DurinckLast Changed Date: 2007-06-10 10:22:32 -0700 Last Changed Rev: 25301 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | [ ERROR ] | skipped | ||
lemming | Windows Server 2003 (32-bit) | x64 | ERROR | skipped | skipped |
Package: RMAGEML |
Version: 2.11.1 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build RMAGEML |
RetCode: 1 |
Time: 7.0 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'RMAGEML/DESCRIPTION' ... OK * preparing 'RMAGEML': * checking DESCRIPTION meta-information ... OK * cleaning src * checking whether 'INDEX' is up-to-date ... NO * use '--force' to overwrite the existing 'INDEX' * installing the package to re-build vignettes * Installing *source* package 'RMAGEML' ... configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/jdk/instances/jdk1.5.0/jre/include -I/usr/jdk/instances/jdk1.5.0/jre/include/linux -I/usr/local/include -fPIC -g -O2 -Wall -c rmageml.c -o rmageml.o In file included from rmageml.c:7: /usr/local/include/jni.h:17:31: error: gcj/libgcj-config.h: No such file or directory rmageml.c: In function 'arji_createJVM': rmageml.c:65: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'destroyOM': rmageml.c:92: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'newRMAGESTK': rmageml.c:109: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'importFeatures': rmageml.c:134: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getGridDimensions': rmageml.c:169: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'selectQTypesDeriv': rmageml.c:211: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getSizeDED': rmageml.c:245: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'selectQTypes': rmageml.c:295: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getExternalData': rmageml.c:349: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getQuantitationTypes': rmageml.c:394: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getQTypeDescription': rmageml.c:432: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'createNewQTDim': rmageml.c:464: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'addQuantitationTypeInfo': rmageml.c:490: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'createNewMBASet': rmageml.c:525: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'setMBA': rmageml.c:549: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'updateMAGEML': rmageml.c:582: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'writeMAGEML': rmageml.c:629: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getVoidArrayInt': rmageml.c:659: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getVoidArrayStr': rmageml.c:694: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getVoidStr': rmageml.c:728: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getVoidVoid': rmageml.c:751: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'destroyOM': rmageml.c:95: warning: control reaches end of non-void function make: *** [rmageml.o] Error 1 chmod: getting attributes of `/tmp/Rinst1580627018/RMAGEML/libs/*': No such file or directory ERROR: compilation failed for package 'RMAGEML' ** Removing '/tmp/Rinst1580627018/RMAGEML' ERROR Installation failed. Removing '/tmp/Rinst1580627018'