Back to the "Multiple platform build/check report"
Package 135/187 | OS | Arch | BUILD | CHECK | BUILD BIN |
plier1.5.0Crispin Miller | Linux (SUSE 9.2) | x86_64 | OK | OK | |
Linux (SUSE 9.2) | i686 | OK | OK | ||
Solaris 2.9 | sparc | OK | [ ERROR ] | ||
Linux (SUSE 10.0) | x86_64 | OK | OK | ||
Windows Server 2003 | x86_64 | OK | OK | OK |
Package: plier |
Version: 1.5.0 |
Command: /loc/biocbuild/1.9d/R/bin/R CMD check plier_1.5.0.tar.gz |
RetCode: 1 |
Time: 46.5 seconds |
Status: ERROR |
CheckDir: plier.Rcheck |
Warnings: NA |
* checking for working latex ... OK * using log directory '/loc/biocbuild/1.9d/Rpacks/plier.Rcheck' * using R version 2.4.0 Under development (unstable) (2006-06-04 r38279) * checking for file 'plier/DESCRIPTION' ... OK * this is package 'plier' version '1.5.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'plier' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... WARNING Error: package 'affy' could not be loaded Call sequence: 3: stop(gettextf("package '%s' could not be loaded", pkg), call. = FALSE, domain = NA) 2: .getRequiredPackages2(pkgInfo) 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) Execution halted See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... WARNING Error: package 'affy' could not be loaded Call sequence: 3: stop(gettextf("package '%s' could not be loaded", pkg), call. = FALSE, domain = NA) 2: .getRequiredPackages2(pkgInfo) 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) Execution halted In R, the argument of a replacement function which corresponds to the right hand side must be named 'value'. * checking foreign function calls ... WARNING Error: package 'affy' could not be loaded Call sequence: 3: stop(gettextf("package '%s' could not be loaded", pkg), call. = FALSE, domain = NA) 2: .getRequiredPackages2(pkgInfo) 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) Execution halted See section 'System and foreign language interfaces' of the 'Writing R Extensions' manual. * checking Rd files ... OK * checking for missing documentation entries ... ERROR Error: package 'affy' could not be loaded
plier.Rcheck/00install.out:
* Installing *source* package 'plier' ... ** libs g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c affyplier.cpp -o affyplier.o g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c plier_impl.cpp -o plier_impl.o g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c plieralg.cpp -o plieralg.o plieralg.cpp: In function `long int NewtonPlier(plier_data*, double&)': plieralg.cpp:909: warning: 'LogLikelihood' might be used uninitialized in this function plieralg.cpp: At global scope: plieralg.cpp:48: warning: 'g_ErrorCode' defined but not used g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c rwrapper.cpp -o rwrapper.o g++ -G -L/usr/local/lib -o plier.so affyplier.o plier_impl.o plieralg.o rwrapper.o ** R ** help >>> Building/Updating help pages for package 'plier' Formats: text html latex example justPlier text html latex example ** building package indices ... * DONE (plier)