flowTrans

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowTrans.

Parameter Optimization for Flow Cytometry Data Transformation


Bioconductor version: 3.9

Profile maximum likelihood estimation of parameters for flow cytometry data transformations.

Author: Greg Finak <gfinak at fredhutch.org>, Juan Manuel-Perez <jperez at ircm.qc.ca>, Raphael Gottardo <rgottard at fredhutch.org>

Maintainer: Greg Finak <gfinak at fredhutch.org>

Citation (from within R, enter citation("flowTrans")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowTrans")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowTrans")
flowTrans package PDF R Script
Reference Manual PDF

Details

biocViews FlowCytometry, ImmunoOncology, Software
Version 1.36.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License Artistic-2.0
Depends R (>= 2.11.0), flowCore, flowViz, flowClust
Imports flowCore, methods, flowViz, stats, flowClust
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowTrans_1.36.0.tar.gz
Windows Binary flowTrans_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) flowTrans_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowTrans
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowTrans
Bioc Package Browser https://code.bioconductor.org/browse/flowTrans/
Package Short Url https://bioconductor.org/packages/flowTrans/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive