flowClust

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowClust.

Clustering for Flow Cytometry


Bioconductor version: 3.9

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo <raph at stat.ubc.ca>, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <gfinak at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>, Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("flowClust")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")
Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package HTML R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version 3.22.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License Artistic-2.0
Depends R (>= 2.5.0)
Imports BiocGenerics, methods, Biobase, graph, ellipse, flowViz, flowCore, clue, corpcor, mnormt, parallel
System Requirements GNU make
URL
See More
Suggests testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto
Linking To
Enhances
Depends On Me flowMerge, flowTrans
Imports Me CONFESS, flowTrans, flowType, openCyto
Suggests Me BiocGenerics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowClust_3.22.0.tar.gz
Windows Binary flowClust_3.22.0.zip
Mac OS X 10.11 (El Capitan) flowClust_3.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowClust
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowClust
Bioc Package Browser https://code.bioconductor.org/browse/flowClust/
Package Short Url https://bioconductor.org/packages/flowClust/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive