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This page was generated on 2025-07-01 15:41 -0400 (Tue, 01 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4775
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 366/429HostnameOS / ArchINSTALLBUILDCHECK
Single.mTEC.Transcriptomes 1.37.0  (landing page)
Alejandro Reyes
Snapshot Date: 2025-07-01 07:30 -0400 (Tue, 01 Jul 2025)
git_url: https://git.bioconductor.org/packages/Single.mTEC.Transcriptomes
git_branch: devel
git_last_commit: 4cfc81c
git_last_commit_date: 2025-04-15 10:04:26 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for Single.mTEC.Transcriptomes on nebbiolo2

To the developers/maintainers of the Single.mTEC.Transcriptomes package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Single.mTEC.Transcriptomes
Version: 1.37.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Single.mTEC.Transcriptomes
StartedAt: 2025-07-01 11:43:18 -0400 (Tue, 01 Jul 2025)
EndedAt: 2025-07-01 11:47:43 -0400 (Tue, 01 Jul 2025)
EllapsedTime: 264.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Single.mTEC.Transcriptomes
###
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* checking for file ‘Single.mTEC.Transcriptomes/DESCRIPTION’ ... OK
* preparing ‘Single.mTEC.Transcriptomes’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘mTECs.Rnw’ using knitr

Quitting from mTECs.Rnw:2713-2758 [Figure_Supp10_unrelated]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `keepSeqlevels()`:
! could not find function "keepSeqlevels"
---
Backtrace:
    x
 1. \-global makePlotForRegion(dn2, left = 1000, right = 1500, colClusterNumber = clusterNumber)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mTECs.Rnw' failed with diagnostics:
could not find function "keepSeqlevels"
--- failed re-building ‘mTECs.Rnw’

SUMMARY: processing the following file failed:
  ‘mTECs.Rnw’

Error: Vignette re-building failed.
Execution halted