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This page was generated on 2024-05-20 11:32:14 -0400 (Mon, 20 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4381
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1127/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.77.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2024-05-18 09:00:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: devel
git_last_commit: 6d12731
git_last_commit_date: 2024-04-30 10:14:36 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for maSigPro on kjohnson1


To the developers/maintainers of the maSigPro package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: maSigPro
Version: 1.77.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.77.0.tar.gz
StartedAt: 2024-05-19 17:52:16 -0400 (Sun, 19 May 2024)
EndedAt: 2024-05-19 17:54:53 -0400 (Sun, 19 May 2024)
EllapsedTime: 156.9 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.77.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/maSigPro.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.77.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
ISOdata       12.260  0.205  12.519
getDSPatterns 12.053  0.220  12.451
tableDS       11.887  0.282  12.173
ISOdesign     11.938  0.196  12.179
IsoModel      11.782  0.330  12.135
getDS         11.641  0.203  11.942
PodiumChange  11.496  0.336  11.910
seeDS         11.243  0.252  11.517
IsoPlot       10.983  0.312  11.323
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maSigPro
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata12.260 0.20512.519
ISOdesign11.938 0.19612.179
IsoModel11.782 0.33012.135
IsoPlot10.983 0.31211.323
NBdata0.0010.0010.003
NBdesign0.0000.0010.002
PlotGroups0.0290.0020.031
PlotProfiles0.0040.0010.005
PodiumChange11.496 0.33611.910
T.fit4.6100.0564.697
average.rows0.0020.0010.003
data.abiotic0.0050.0020.007
edesign.abiotic0.0020.0020.005
edesignCT0.0010.0020.002
edesignDR0.0000.0020.002
get.siggenes2.3350.0292.405
getDS11.641 0.20311.942
getDSPatterns12.053 0.22012.451
i.rank0.0010.0000.001
maSigProUsersGuide0.0050.0070.012
make.design.matrix0.0050.0090.014
p.vector1.4770.0211.499
position000
reg.coeffs000
see.genes0.5490.0290.579
seeDS11.243 0.25211.517
stepback0.0270.0010.028
stepfor0.0780.0010.079
suma2Venn0.0230.0030.027
tableDS11.887 0.28212.173
two.ways.stepback0.0700.0020.072
two.ways.stepfor0.0830.0010.084