Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:08 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 196/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
biodb 1.13.0 (landing page) Pierrick Roger
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the biodb package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: biodb |
Version: 1.13.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data biodb |
StartedAt: 2024-05-18 14:16:06 -0400 (Sat, 18 May 2024) |
EndedAt: 2024-05-18 14:17:43 -0400 (Sat, 18 May 2024) |
EllapsedTime: 97.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data biodb ### ############################################################################## ############################################################################## * checking for file ‘biodb/DESCRIPTION’ ... OK * preparing ‘biodb’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘biodb.Rmd’ using rmarkdown --- finished re-building ‘biodb.Rmd’ --- re-building ‘details.Rmd’ using rmarkdown --- finished re-building ‘details.Rmd’ --- re-building ‘entries.Rmd’ using rmarkdown [WARNING] Citeproc: citation H not found --- finished re-building ‘entries.Rmd’ --- re-building ‘new_connector.Rmd’ using rmarkdown Quitting from lines at lines 420-422 [unnamed-chunk-17] (new_connector.Rmd) Error: processing vignette 'new_connector.Rmd' failed with diagnostics: attempt to apply non-function --- failed re-building ‘new_connector.Rmd’ --- re-building ‘new_entry_field.Rmd’ using rmarkdown --- finished re-building ‘new_entry_field.Rmd’ SUMMARY: processing the following file failed: ‘new_connector.Rmd’ Error: Vignette re-building failed. Execution halted