Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:22 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2122/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TrajectoryGeometry 1.13.0 (landing page) Michael Shapiro
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the TrajectoryGeometry package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: TrajectoryGeometry |
Version: 1.13.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:TrajectoryGeometry.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings TrajectoryGeometry_1.13.0.tar.gz |
StartedAt: 2024-05-20 05:26:37 -0400 (Mon, 20 May 2024) |
EndedAt: 2024-05-20 05:27:51 -0400 (Mon, 20 May 2024) |
EllapsedTime: 73.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TrajectoryGeometry.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:TrajectoryGeometry.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings TrajectoryGeometry_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/TrajectoryGeometry.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TrajectoryGeometry/DESCRIPTION’ ... OK * this is package ‘TrajectoryGeometry’ version ‘1.13.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TrajectoryGeometry’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE visualiseBranchPointStats: no visible binding for global variable ‘value’ visualiseBranchPointStats: no visible binding for global variable ‘logPValue’ visualiseTrajectoryStats: no visible binding for global variable ‘type’ visualiseTrajectoryStats: no visible binding for global variable ‘value’ Undefined global functions or variables: logPValue type value * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed testPathForDirectionality 11.784 0.042 11.856 analyseBranchPoint 10.938 0.045 11.061 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/TrajectoryGeometry.Rcheck/00check.log’ for details.
TrajectoryGeometry.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL TrajectoryGeometry ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘TrajectoryGeometry’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TrajectoryGeometry)
TrajectoryGeometry.Rcheck/TrajectoryGeometry-Ex.timings
name | user | system | elapsed | |
analyseBranchPoint | 10.938 | 0.045 | 11.061 | |
analyseSingleCellTrajectory | 2.205 | 0.007 | 2.220 | |
circleOnTheUnitSphere | 0.002 | 0.000 | 0.002 | |
distanceBetweenTrajectories | 1.271 | 0.012 | 1.287 | |
findSphereClusterCenter | 0.056 | 0.000 | 0.058 | |
findSphericalDistance | 0.001 | 0.000 | 0.000 | |
generateRandomPaths | 0.001 | 0.001 | 0.001 | |
generateRandomUnitVector | 0.000 | 0.000 | 0.001 | |
getDistanceDataForPaths | 0.380 | 0.002 | 0.382 | |
getSphericalData | 0.054 | 0.000 | 0.054 | |
getStepLengths | 0.000 | 0.000 | 0.001 | |
orthonormalBasis | 0.000 | 0.001 | 0.000 | |
pathProgression | 0.001 | 0.000 | 0.001 | |
pathToSphericalData | 0.050 | 0.001 | 0.051 | |
plotPathProjectionCenterAndCircle | 0.030 | 0.001 | 0.031 | |
projectPathToSphere | 0.000 | 0.000 | 0.001 | |
samplePath | 0.001 | 0.001 | 0.003 | |
testPathForDirectionality | 11.784 | 0.042 | 11.856 | |
visualiseBranchPointStats | 0.873 | 0.003 | 0.879 | |
visualiseTrajectoryStats | 2.356 | 0.024 | 2.394 | |