Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:17 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1492/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PepsNMR 1.23.0 (landing page) Manon Martin
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the PepsNMR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: PepsNMR |
Version: 1.23.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.23.0.tar.gz |
StartedAt: 2024-05-19 22:07:36 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 22:18:11 -0400 (Sun, 19 May 2024) |
EllapsedTime: 635.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PepsNMR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/PepsNMR.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PepsNMR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PepsNMR’ version ‘1.23.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PepsNMR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) Normalization.Rd:47: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed PreprocessingChain 253.153 21.064 278.635 PEPSNMR-package 249.625 20.321 274.493 Warping 11.191 1.423 12.650 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/PepsNMR.Rcheck/00check.log’ for details.
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
name | user | system | elapsed | |
Apodization | 0.753 | 0.042 | 0.802 | |
BaselineCorrection | 0.619 | 0.057 | 0.676 | |
Bucketing | 0.052 | 0.003 | 0.055 | |
Draw | 0.945 | 0.053 | 1.001 | |
DrawPCA | 0.705 | 0.023 | 0.728 | |
DrawSignal | 0.462 | 0.012 | 0.475 | |
FirstOrderPhaseCorrection | 0.049 | 0.004 | 0.053 | |
FourierTransform | 0.030 | 0.005 | 0.036 | |
GroupDelayCorrection | 0.063 | 0.010 | 0.073 | |
InternalReferencing | 0.028 | 0.004 | 0.032 | |
NegativeValuesZeroing | 0.014 | 0.002 | 0.015 | |
Normalization | 0.010 | 0.001 | 0.011 | |
PEPSNMR-package | 249.625 | 20.321 | 274.493 | |
PreprocessingChain | 253.153 | 21.064 | 278.635 | |
ReadFids | 0.243 | 0.056 | 0.300 | |
RegionRemoval | 0.010 | 0.001 | 0.011 | |
SolventSuppression | 0.105 | 0.018 | 0.123 | |
Warping | 11.191 | 1.423 | 12.650 | |
WindowSelection | 0.025 | 0.002 | 0.027 | |
ZeroFilling | 0.087 | 0.002 | 0.090 | |
ZeroOrderPhaseCorrection | 0.076 | 0.030 | 0.106 | |
ZoneAggregation | 0.409 | 0.030 | 0.441 | |