Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:10 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 461/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CTDquerier 2.13.0 (landing page) Xavier Escribà-Montagut
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | ||||||||
To the developers/maintainers of the CTDquerier package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CTDquerier |
Version: 2.13.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CTDquerier.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CTDquerier_2.13.0.tar.gz |
StartedAt: 2024-05-19 10:05:17 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 10:07:32 -0400 (Sun, 19 May 2024) |
EllapsedTime: 135.2 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: CTDquerier.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CTDquerier.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CTDquerier_2.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/CTDquerier.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CTDquerier/DESCRIPTION’ ... OK * this is package ‘CTDquerier’ version ‘2.13.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CTDquerier’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 176 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘batch_query.Rmd’ ‘biomed-central.csl’ ‘case_study.Rmd’ ‘case_study.bib’ ‘img/01_CTDbase.png’ ‘img/02_XKR4_keyword.png’ ‘img/03_BatchQuery.png’ ‘vignette.Rmd’ * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed load_ctd_gene 16.652 0.295 17.018 query_ctd_gene 15.275 0.290 18.999 enrich-methods 11.375 0.194 12.550 query_ctd_chem 9.889 0.185 11.856 load_ctd_chem 4.913 0.088 5.064 * checking package vignettes ... NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/CTDquerier.Rcheck/00check.log’ for details.
CTDquerier.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CTDquerier ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘CTDquerier’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CTDquerier)
CTDquerier.Rcheck/CTDquerier-Ex.timings
name | user | system | elapsed | |
download_ctd_chem | 1.273 | 0.086 | 1.383 | |
download_ctd_dise | 0.139 | 0.008 | 0.147 | |
download_ctd_genes | 0.125 | 0.008 | 0.132 | |
enrich-methods | 11.375 | 0.194 | 12.550 | |
gala | 1.451 | 0.023 | 1.482 | |
get_table-methods | 1.220 | 0.012 | 1.239 | |
get_terms-methods | 1.033 | 0.012 | 1.068 | |
leaf_plot | 0.514 | 0.030 | 0.559 | |
load_ctd_chem | 4.913 | 0.088 | 5.064 | |
load_ctd_dise | 0.734 | 0.038 | 0.777 | |
load_ctd_gene | 16.652 | 0.295 | 17.018 | |
query_ctd_chem | 9.889 | 0.185 | 11.856 | |
query_ctd_dise | 0.815 | 0.042 | 1.508 | |
query_ctd_gene | 15.275 | 0.290 | 18.999 | |