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BioC 3.5: INSTALL report for GLAD on oaxaca

This page was generated on 2017-03-04 16:34:09 -0500 (Sat, 04 Mar 2017).

Package 544/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GLAD 2.39.0
Philippe Hupe
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GLAD
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  OK  OK 

Summary

Package: GLAD
Version: 2.39.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GLAD
StartedAt: 2017-03-03 15:07:23 -0800 (Fri, 03 Mar 2017)
EndedAt: 2017-03-03 15:07:32 -0800 (Fri, 03 Mar 2017)
EllapsedTime: 8.6 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GLAD
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’
* installing *source* package ‘GLAD’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
GSL has been found on the operating system
operating system: Darwin
configure: creating ./config.status
config.status: creating src/Makevars

src/Makevars file

PKG_LIBS = -L/usr/local/lib -lgsl -lgslcblas -lm  
PKG_CPPFLAGS = -DIS_MAC_OS

** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c BkpInfo.cpp -o BkpInfo.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c HaarSeg.cpp -o HaarSeg.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c MoveBkp.cpp -o MoveBkp.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c OutliersGNL.cpp -o OutliersGNL.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c chrBreakpoints.cpp -o chrBreakpoints.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c cutree.cpp -o cutree.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c daglad.cpp -o daglad.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c distance.cpp -o distance.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c filterBkp.cpp -o filterBkp.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c findCluster.cpp -o findCluster.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c glad-utils.cpp -o glad-utils.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c hclust.cpp -o hclust.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c laws.c -o laws.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DIS_MAC_OS  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c loopRemove.cpp -o loopRemove.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/GLAD/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GLAD)