BioC 3.5: CHECK report for trackViewer on oaxaca

Package: trackViewer

Version: 1.11.6

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings trackViewer_1.11.6.tar.gz

StartedAt: 2017-03-04 10:08:13 -0800 (Sat, 04 Mar 2017)

EndedAt: 2017-03-04 10:15:01 -0800 (Sat, 04 Mar 2017)

EllapsedTime: 407.6 seconds

RetCode: 0

Status:  OK

CheckDir: trackViewer.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings trackViewer_1.11.6.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/trackViewer.Rcheck’
* using R Under development (unstable) (2017-02-15 r72177)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘trackViewer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘trackViewer’ version ‘1.11.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘trackViewer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
trackViewer-package 19.267  0.182  19.461
geneModelFromTxdb   11.233  0.812  23.167
parseWIG            11.094  0.043  11.142
viewTracks          10.354  0.057  10.417
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘trackViewer’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (trackViewer)

name	user	system	elapsed
GRoperator	1.844	0.046	1.890
addArrowMark	0.011	0.001	0.011
addGuideLine	0.006	0.000	0.007
coverageGR	0.350	0.003	0.353
dandelion.plot	1.757	0.007	1.765
geneModelFromTxdb	11.233	0.812	23.167
getCurTrackViewport	0.029	0.000	0.030
ideogramPlot	0	0	0
importBam	0.667	0.004	0.689
importData	2.127	0.024	2.173
importScore	0.937	0.016	0.952
loadIdeogram	0.001	0.000	0.001
lolliplot	1.187	0.006	1.193
optimizeStyle	0.770	0.014	0.785
parse2GRanges	0.01	0.00	0.01
parseWIG	11.094	0.043	11.142
plotGRanges	1.567	0.003	1.596
track	0.041	0.001	0.042
trackViewer-package	19.267	0.182	19.461
trackViewerStyle	0.001	0.000	0.001
viewTracks	10.354	0.057	10.417