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BioC 3.5: CHECK report for RTN on toluca2

This page was generated on 2017-04-23 14:37:36 -0400 (Sun, 23 Apr 2017).

Package 1157/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTN 1.13.13
Mauro Castro
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RTN
Last Changed Rev: 128975 / Revision: 129046
Last Changed Date: 2017-04-20 16:46:31 -0400 (Thu, 20 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK [ OK ] OK 
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTN
Version: 1.13.13
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RTN_1.13.13.tar.gz
StartedAt: 2017-04-23 09:28:03 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 09:31:15 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 192.1 seconds
RetCode: 0
Status:  OK 
CheckDir: RTN.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RTN_1.13.13.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/RTN.Rcheck’
* using R Under development (unstable) (2017-02-15 r72187)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTN/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTN’ version ‘1.13.13’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTN’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.4Mb
  sub-directories of 1Mb or more:
    data   7.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.5-bioc/meat/RTN.Rcheck/00check.log’
for details.


RTN.Rcheck/00install.out:

* installing *source* package ‘RTN’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RTN)

RTN.Rcheck/RTN-Ex.timings:

nameusersystemelapsed
AVS-class0.0010.0000.001
RTN.data0.9670.0310.999
TNA-class0.0010.0000.000
TNI-class0.9660.0160.982
avs.evse0.0020.0000.002
avs.get0.0010.0000.001
avs.plot10.0000.0000.001
avs.plot20.0010.0000.001
avs.preprocess.LD1000gRel201305020.0010.0000.001
avs.preprocess.LDHapMapRel270.0010.0000.001
avs.vse0.0030.0000.003
tna.get1.0170.0181.036
tna.graph1.1840.0191.204
tna.gsea10.9330.0240.959
tna.gsea20.9290.0200.950
tna.mra0.9550.0200.975
tna.overlap0.9550.0170.973
tna.plot.gsea10.9500.0170.968
tna.plot.gsea20.9620.0190.981
tna.shadow0.9400.0190.959
tna.synergy0.9560.0180.976
tni.bootstrap0.9640.0210.986
tni.conditional0.9660.0190.988
tni.dpi.filter0.9590.0180.980
tni.get0.9720.0180.991
tni.graph0.9480.0190.968
tni.gsea20.9560.0190.979
tni.permutation1.1730.0201.199
tni.preprocess2.2280.0892.318
tni2tna.preprocess0.9320.0170.950