BioC 3.5: CHECK report for IWTomics on toluca2

Package: IWTomics

Version: 0.99.12

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings IWTomics_0.99.12.tar.gz

StartedAt: 2017-04-23 05:43:45 -0400 (Sun, 23 Apr 2017)

EndedAt: 2017-04-23 05:48:24 -0400 (Sun, 23 Apr 2017)

EllapsedTime: 278.8 seconds

RetCode: 0

Status:  OK

CheckDir: IWTomics.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings IWTomics_0.99.12.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/IWTomics.Rcheck’
* using R Under development (unstable) (2017-02-15 r72187)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IWTomics/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IWTomics’ version ‘0.99.12’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IWTomics’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
IWTomicsTest       80.195  1.534  82.555
IWTomics-package   18.337  1.189  19.694
IWTomicsData-class 13.758  0.032  13.903
plotSummary         8.623  1.412  10.361
plotTest            5.161  0.759   6.086
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘IWTomics’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘smooth’ in package ‘IWTomics’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IWTomics)

name	user	system	elapsed
ETn_example	0.443	0.009	0.454
IWTomics-package	18.337	1.189	19.694
IWTomicsData-class	13.758	0.032	13.903
IWTomicsTest	80.195	1.534	82.555
features_example	0.002	0.001	0.003
plot-IWTomicsData	0.537	0.016	0.584
plotSummary	8.623	1.412	10.361
plotTest	5.161	0.759	6.086
regionsFeatures_center	0.004	0.001	0.005
regionsFeatures_scale	0.004	0.001	0.005
regions_example	0.002	0.001	0.003
smooth-IWTomicsData	1.915	0.040	1.992