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BioC 3.5: BUILD BIN report for GeneSelectMMD on toluca2

This page was generated on 2017-04-23 14:34:46 -0400 (Sun, 23 Apr 2017).

Package 522/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.19.0
Weiliang Qiu
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneSelectMMD
Last Changed Rev: 122712 / Revision: 129046
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneSelectMMD
Version: 2.19.0
Command: rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneSelectMMD_2.19.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneSelectMMD.buildbin-libdir
StartedAt: 2017-04-23 12:05:33 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 12:05:44 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 10.1 seconds
RetCode: 0
Status:  OK 
PackageFile: GeneSelectMMD_2.19.0.tgz
PackageFileSize: 410.7 KiB

Command output

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###
### Running command:
###
###   rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneSelectMMD_2.19.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneSelectMMD.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneSelectMMD.buildbin-libdir GeneSelectMMD_2.19.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneSelectMMD’ ...
** libs
gfortran-4.8   -fPIC  -g -O2  -c Qfunc.f -o Qfunc.o
gfortran-4.8   -fPIC  -g -O2  -c blas.f -o blas.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c isnan.c -o isnan.o
gfortran-4.8   -fPIC  -g -O2  -c lbfgsb.f -o lbfgsb.o
gfortran-4.8   -fPIC  -g -O2  -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran-4.8   -fPIC  -g -O2  -c linpack.f -o linpack.o
gfortran-4.8   -fPIC  -g -O2  -c llkhFun.f -o llkhFun.o
gfortran-4.8   -fPIC  -g -O2  -c myTtest.f -o myTtest.o
gfortran-4.8   -fPIC  -g -O2  -c paraEstLoop.f -o paraEstLoop.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c pt.c -o pt.o
gfortran-4.8   -fPIC  -g -O2  -c timer.f -o timer.o
gfortran-4.8   -fPIC  -g -O2  -c wiFun.f -o wiFun.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GeneSelectMMD.so Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneSelectMMD)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"