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BioC 3.5: BUILD BIN report for GSVA on toluca2

This page was generated on 2017-04-23 14:35:44 -0400 (Sun, 23 Apr 2017).

Package 604/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSVA 1.23.6
Justin Guinney
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GSVA
Last Changed Rev: 128904 / Revision: 129046
Last Changed Date: 2017-04-19 16:44:29 -0400 (Wed, 19 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GSVA
Version: 1.23.6
Command: rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GSVA_1.23.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GSVA.buildbin-libdir
StartedAt: 2017-04-23 12:10:37 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 12:10:49 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 11.7 seconds
RetCode: 0
Status:  OK 
PackageFile: GSVA_1.23.6.tgz
PackageFileSize: 1.433 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GSVA_1.23.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GSVA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GSVA.buildbin-libdir GSVA_1.23.6.tar.gz'
>>>>>>> 

* installing *source* package ‘GSVA’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c kernel_estimation.c -o kernel_estimation.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c ks_test.c -o ks_test.o
ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable]
        double mx_value = 0.0;
               ^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c register_cmethods.c -o register_cmethods.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GSVA.so kernel_estimation.o ks_test.o register_cmethods.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/GSVA.buildbin-libdir/GSVA/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSVA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GSVA.buildbin-libdir/GSVA/libs//GSVA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"