BioC 3.5: BUILD BIN report for GOSim on toluca2

Package: GOSim

Version: 1.13.0

Command: rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.13.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir

StartedAt: 2017-04-23 12:08:46 -0400 (Sun, 23 Apr 2017)

EndedAt: 2017-04-23 12:09:08 -0400 (Sun, 23 Apr 2017)

EllapsedTime: 21.9 seconds

RetCode: 0

Status:  OK

PackageFile: GOSim_1.13.0.tgz

PackageFileSize: 461.7 KiB

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### Running command:
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###   rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.13.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GOSim.buildbin-libdir GOSim_1.13.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GOSim’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -fPIC  -Wall -mtune=core2 -g -O2  -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GOSim.so OAWrapper.o hungarian2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
Loading required package: Rcpp
installing to /Users/biocbuild/bbs-3.5-bioc/meat/GOSim.buildbin-libdir/GOSim/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GOSim)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GOSim.buildbin-libdir/GOSim/libs//GOSim.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"