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BioC 3.5: BUILD report for BSgenome on oaxaca

This page was generated on 2017-03-04 16:34:44 -0500 (Sat, 04 Mar 2017).

Package 144/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.43.7
H. Pagès
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BSgenome
Last Changed Rev: 126927 / Revision: 127142
Last Changed Date: 2017-02-23 13:17:43 -0500 (Thu, 23 Feb 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  ERROR  OK 
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK [ OK ] WARNINGS  OK 

Summary

Package: BSgenome
Version: 1.43.7
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2017-03-03 15:58:18 -0800 (Fri, 03 Mar 2017)
EndedAt: 2017-03-03 15:59:49 -0800 (Fri, 03 Mar 2017)
EllapsedTime: 91.5 seconds
RetCode: 0
Status:  OK 
PackageFile: BSgenome_1.43.7.tar.gz
PackageFileSize: 5.795 MiB

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory ‘BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/tests’ is empty
* building ‘BSgenome_1.43.7.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh’