destiny 2.4.4
Philipp Angerer
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/destiny | | Last Changed Rev: 131284 / Revision: 131943 | | Last Changed Date: 2017-07-17 10:40:13 -0400 (Mon, 17 Jul 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | ERROR | [ ERROR ] | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | ERROR | ERROR | skipped | skipped | |
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data destiny
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* checking for file ‘destiny/DESCRIPTION’ ... OK
* preparing ‘destiny’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘destiny’ ...
** libs
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/RcppEigen/include" -I/usr/local/include -ggdb -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/RcppEigen/include" -I/usr/local/include -ggdb -fpic -g -O2 -c censoring.cpp -o censoring.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/RcppEigen/include" -I/usr/local/include -ggdb -fpic -g -O2 -c no_censoring.cpp -o no_censoring.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o destiny.so RcppExports.o censoring.o no_censoring.o -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /tmp/RtmpQNTCyY/Rinst3176f7f3c65/destiny/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
‘DPT.ipynbmeta’ using ‘UTF-8’
Error in nbconvert(file, "script", ...) :
The call “'jupyter' 'nbconvert' '--to' 'script' 'DPT.ipynb'” failed with exit status 255
ERROR: installing vignettes failed
* removing ‘/tmp/RtmpQNTCyY/Rinst3176f7f3c65/destiny’
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ERROR: package installation failed