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BioC 3.5: CHECK report for Prize on oaxaca

This page was generated on 2017-03-04 16:50:07 -0500 (Sat, 04 Mar 2017).

Package 971/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Prize 1.5.1
Daryanaz Dargahi
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Prize
Last Changed Rev: 125094 / Revision: 127142
Last Changed Date: 2016-12-13 16:16:23 -0500 (Tue, 13 Dec 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: Prize
Version: 1.5.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Prize_1.5.1.tar.gz
StartedAt: 2017-03-04 07:17:03 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 07:18:43 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 99.8 seconds
RetCode: 0
Status:  OK 
CheckDir: Prize.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Prize_1.5.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/Prize.Rcheck’
* using R Under development (unstable) (2017-02-15 r72177)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Prize/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Prize’ version ‘1.5.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Prize’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
Prize-package 9.681  0.065   9.912
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Prize.Rcheck/00install.out:

* installing *source* package ‘Prize’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Prize)

Prize.Rcheck/Prize-Ex.timings:

nameusersystemelapsed
AIJ2.6720.0102.683
AIP1.9620.0111.972
CI2.8850.0152.902
GCR2.6040.0062.610
ICR3.8510.0113.864
IP3.6040.0053.610
Prize-package9.6810.0659.912
RM0.360.000.36
ahmatrix0.0010.0000.001
ahp0.3780.0000.379
ahp_matrix0.0010.0000.001
ahp_plot3.4150.0323.450
ahp_weights2.7520.0292.780
ahplot0.2510.0010.253
crplot0.3340.0000.335
dplot0.2520.0020.254
gaggregate4.3160.0084.325
pipeline2.6380.0322.671
rainbow_plot2.5590.0272.586
rainbowplot0.2900.0010.291
rating0.5610.0010.563
saaty_inconsistency3.4430.0313.476
simulation2.7760.0272.804
weight0.5350.0030.537
weight_plot2.5910.0242.617
wplot0.5980.0020.600