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BioC 3.4: INSTALL report for rnaSeqMap on zin1

This page was generated on 2016-09-21 03:37:06 -0700 (Wed, 21 Sep 2016).

Package 1035/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rnaSeqMap 2.31.0
Michal Okoniewski
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rnaSeqMap
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: rnaSeqMap
Version: 2.31.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL rnaSeqMap
StartedAt: 2016-09-19 20:14:55 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:15:09 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 14.3 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL rnaSeqMap
###
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* installing to library ‘/home/biocbuild/bbs-3.4-bioc/R/library’
* installing *source* package ‘rnaSeqMap’ ...
** libs
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Rinit.c -o Rinit.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c gcoverage.c -o gcoverage.o
gcoverage.c: In function ‘gcoverage’:
gcoverage.c:7:31: warning: variable ‘nc’ set but not used [-Wunused-but-set-variable]
     int  start, i, j, na, nb, nc, nwyn;
                               ^
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c ghistogram.c -o ghistogram.o
ghistogram.c: In function ‘ghistogram’:
ghistogram.c:9:10: warning: variable ‘xa’ set but not used [-Wunused-but-set-variable]
     int *xa, *xb, *xab;
          ^
ghistogram.c:8:20: warning: variable ‘nb’ set but not used [-Wunused-but-set-variable]
  int i, j, l , na, nb, nab, Is;
                    ^
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c regionmining.c -o regionmining.o
regionmining.c: In function ‘regionmining’:
regionmining.c:22:18: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
     int current, start, param, minsup,*xwyn; 
                  ^
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c splicingind.c -o splicingind.o
splicingind.c: In function ‘splicingind’:
splicingind.c:8:13: warning: variable ‘nb’ set but not used [-Wunused-but-set-variable]
  int j, na, nb, nab;
             ^
gcc -shared -L/home/biocbuild/bbs-3.4-bioc/R/lib -L/usr/local/lib -o rnaSeqMap.so Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -L/home/biocbuild/bbs-3.4-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.4-bioc/R/library/rnaSeqMap/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rnaSeqMap)