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BioC 3.4: INSTALL report for VariantFiltering on zin1

This page was generated on 2016-09-21 03:38:55 -0700 (Wed, 21 Sep 2016).

Package 1235/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VariantFiltering 1.9.13
Robert Castelo
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VariantFiltering
Last Changed Rev: 120095 / Revision: 121152
Last Changed Date: 2016-08-12 03:17:36 -0700 (Fri, 12 Aug 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: VariantFiltering
Version: 1.9.13
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL VariantFiltering
StartedAt: 2016-09-19 20:25:46 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:26:08 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 22.0 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL VariantFiltering
###
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* installing to library ‘/home/biocbuild/bbs-3.4-bioc/R/library’
* installing *source* package ‘VariantFiltering’ ...
** libs
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.4-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.4-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c R_init_VariantFiltering.c -o R_init_VariantFiltering.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.4-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c methods-WeightMatrix.c -o methods-WeightMatrix.o
methods-WeightMatrix.c: In function ‘scoss_wm_score’:
methods-WeightMatrix.c:100:11: warning: unused variable ‘scores’ [-Wunused-variable]
   double* scores;
           ^
methods-WeightMatrix.c:99:7: warning: unused variable ‘nsco’ [-Wunused-variable]
   int nsco = INTEGER(nscoR)[0];
       ^
methods-WeightMatrix.c:96:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
   int i, j, k;
             ^
methods-WeightMatrix.c: In function ‘scoss_wm_score_DNAStringSet’:
methods-WeightMatrix.c:131:11: warning: unused variable ‘scores’ [-Wunused-variable]
   double* scores;
           ^
methods-WeightMatrix.c:129:7: warning: unused variable ‘nsco’ [-Wunused-variable]
   int nsco = INTEGER(nscoR)[0];
       ^
gcc -shared -L/home/biocbuild/bbs-3.4-bioc/R/lib -L/usr/local/lib -o VariantFiltering.so Biostrings_stubs.o R_init_VariantFiltering.o methods-WeightMatrix.o -L/home/biocbuild/bbs-3.4-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.4-bioc/R/library/VariantFiltering/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (VariantFiltering)