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BioC 3.4: INSTALL report for DNAcopy on zin1

This page was generated on 2016-09-21 03:35:47 -0700 (Wed, 21 Sep 2016).

Package 329/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.47.1
Venkatraman E. Seshan
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DNAcopy
Last Changed Rev: 117468 / Revision: 121152
Last Changed Date: 2016-05-13 13:34:31 -0700 (Fri, 13 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DNAcopy
Version: 1.47.1
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL DNAcopy
StartedAt: 2016-09-19 20:00:26 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:00:29 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 3.2 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL DNAcopy
###
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* installing to library ‘/home/biocbuild/bbs-3.4-bioc/R/library’
* installing *source* package ‘DNAcopy’ ...
** libs
f95   -fpic  -g -O2  -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f:283:0:

       iseg(2) = tmaxj
 ^
Warning: ‘tmaxj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
cbsWtstats.f:282:0:

       iseg(1) = tmaxi
 ^
Warning: ‘tmaxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
f95   -fpic  -g -O2  -Wall -c cbststats.f -o cbststats.o
cbststats.f:258:0:

                      tmaxj = sxmxi + i2j
 ^
Warning: ‘sxmxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
f95   -fpic  -g -O2  -Wall -c changepoints-wtd.f -o changepoints-wtd.o
f95   -fpic  -g -O2  -Wall -c changepoints.f -o changepoints.o
f95   -fpic  -g -O2  -Wall -c esegment.f -o esegment.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c flchoose.c -o flchoose.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c fphyper.c -o fphyper.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c fpnorm.c -o fpnorm.o
f95   -fpic  -g -O2  -Wall -c getbdry.f -o getbdry.o
f95   -fpic  -g -O2  -Wall -c prune.f -o prune.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c rshared.c -o rshared.o
f95   -fpic  -g -O2  -Wall -c segmentp.f -o segmentp.o
f95   -fpic  -g -O2  -Wall -c smoothCNA.f -o smoothCNA.o
f95   -fpic  -g -O2  -Wall -c tailprobs.f -o tailprobs.o
gcc -shared -L/home/biocbuild/bbs-3.4-bioc/R/lib -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.4-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.4-bioc/R/library/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DNAcopy)