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BioC 3.4: CHECK report for globalSeq on moscato1

This page was generated on 2016-09-21 03:47:46 -0700 (Wed, 21 Sep 2016).

Package 520/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
globalSeq 1.1.2
Armin Rauschenberger
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/globalSeq
Last Changed Rev: 117512 / Revision: 121152
Last Changed Date: 2016-05-15 13:14:22 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: globalSeq
Version: 1.1.2
Command: rm -rf globalSeq.buildbin-libdir globalSeq.Rcheck && mkdir globalSeq.buildbin-libdir globalSeq.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=globalSeq.buildbin-libdir globalSeq_1.1.2.tar.gz >globalSeq.Rcheck\00install.out 2>&1 && cp globalSeq.Rcheck\00install.out globalSeq-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=globalSeq.buildbin-libdir --install="check:globalSeq-install.out" --force-multiarch --no-vignettes --timings globalSeq_1.1.2.tar.gz
StartedAt: 2016-09-20 09:38:32 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 09:39:31 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 58.7 seconds
RetCode: 0
Status:  OK  
CheckDir: globalSeq.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf globalSeq.buildbin-libdir globalSeq.Rcheck && mkdir globalSeq.buildbin-libdir globalSeq.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=globalSeq.buildbin-libdir globalSeq_1.1.2.tar.gz >globalSeq.Rcheck\00install.out 2>&1 && cp globalSeq.Rcheck\00install.out globalSeq-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=globalSeq.buildbin-libdir --install="check:globalSeq-install.out" --force-multiarch --no-vignettes --timings globalSeq_1.1.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/globalSeq.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'globalSeq/DESCRIPTION' ... OK
* this is package 'globalSeq' version '1.1.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'globalSeq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

globalSeq.Rcheck/00install.out:


install for i386

* installing *source* package 'globalSeq' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'globalSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'globalSeq' as globalSeq_1.1.2.zip
* DONE (globalSeq)

globalSeq.Rcheck/examples_i386/globalSeq-Ex.timings:

nameusersystemelapsed
cursus0.080.000.62
intern.chromo0.090.000.66
intern.crude0.050.000.05
intern.estim0.010.000.01
intern.matrix000
intern.permu0.040.000.03
intern.plot0.060.000.07
intern.sam0.010.000.01
intern.score000
intern.select0.070.020.63
omnibus0.110.000.10
proprius0.010.000.02

globalSeq.Rcheck/examples_x64/globalSeq-Ex.timings:

nameusersystemelapsed
cursus0.040.050.74
intern.chromo0.060.000.71
intern.crude0.070.000.07
intern.estim0.010.010.03
intern.matrix000
intern.permu0.050.000.04
intern.plot0.080.000.08
intern.sam0.030.000.03
intern.score000
intern.select0.090.020.80
omnibus0.160.000.15
proprius0.010.020.04