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BioC 3.4: CHECK report for PROcess on moscato1

This page was generated on 2016-09-21 03:41:20 -0700 (Wed, 21 Sep 2016).

Package 923/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PROcess 1.49.0
Xiaochun Li
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PROcess
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PROcess
Version: 1.49.0
Command: rm -rf PROcess.buildbin-libdir PROcess.Rcheck && mkdir PROcess.buildbin-libdir PROcess.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PROcess.buildbin-libdir PROcess_1.49.0.tar.gz >PROcess.Rcheck\00install.out 2>&1 && cp PROcess.Rcheck\00install.out PROcess-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=PROcess.buildbin-libdir --install="check:PROcess-install.out" --force-multiarch --no-vignettes --timings PROcess_1.49.0.tar.gz
StartedAt: 2016-09-20 14:12:48 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 14:14:18 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 90.2 seconds
RetCode: 0
Status:  OK  
CheckDir: PROcess.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf PROcess.buildbin-libdir PROcess.Rcheck && mkdir PROcess.buildbin-libdir PROcess.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PROcess.buildbin-libdir PROcess_1.49.0.tar.gz >PROcess.Rcheck\00install.out 2>&1 && cp PROcess.Rcheck\00install.out PROcess-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=PROcess.buildbin-libdir --install="check:PROcess-install.out" --force-multiarch --no-vignettes --timings PROcess_1.49.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/PROcess.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PROcess/DESCRIPTION' ... OK
* this is package 'PROcess' version '1.49.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PROcess' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Icens'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gelmap: warning in axis(1, at = at.mz, lab = at.mz, las = 2, lty = 0,
  cex.axis = 0.8): partial argument match of 'lab' to 'labels'
gelmap: warning in axis(2, at = at.col, lab = sampLab[at.col], las = 2,
  lty = 0, cex.axis = cexCol): partial argument match of 'lab' to
  'labels'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.4-bioc/meat/PROcess.Rcheck/00check.log'
for details.


PROcess.Rcheck/00install.out:


install for i386

* installing *source* package 'PROcess' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'PROcess' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PROcess' as PROcess_1.49.0.zip
* DONE (PROcess)

PROcess.Rcheck/examples_i386/PROcess-Ex.timings:

nameusersystemelapsed
aveSpec0.260.000.26
bslnoff0.490.000.48
getPeaks2.580.012.61
intg000
is.multiple000
isPeak1.720.021.73
peaks0.060.000.07
pk2bmkr2.320.032.35
quality3.480.053.53
renorm0.690.000.68
rmBaseline0.650.000.69
specZoom1.630.031.65

PROcess.Rcheck/examples_x64/PROcess-Ex.timings:

nameusersystemelapsed
aveSpec0.310.000.31
bslnoff0.430.020.46
getPeaks2.950.012.99
intg000
is.multiple000
isPeak1.920.001.92
peaks0.050.000.05
pk2bmkr2.620.032.65
quality4.060.074.12
renorm0.710.000.72
rmBaseline0.720.000.71
specZoom1.840.012.02