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BioC experimental data: CHECK report for pRolocdata on linux2.bioconductor.org

This page was generated on 2015-10-24 19:25:32 -0400 (Sat, 24 Oct 2015).

Package 191/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRolocdata 1.9.0
Laurent Gatto
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRolocdata
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: pRolocdata
Version: 1.9.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.9.0.tar.gz
StartedAt: 2015-10-24 12:35:30 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 12:37:15 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 104.8 seconds
RetCode: 0
Status:  OK 
CheckDir: pRolocdata.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.9.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/pRolocdata.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... [9s/9s] OK
* checking installed package size ... NOTE
  installed size is 23.8Mb
  sub-directories of 1Mb or more:
    data      7.9Mb
    extdata  15.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [15s/16s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
fabre2015 5.52  0.134   5.957
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.


pRolocdata.Rcheck/00install.out:

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pRolocdata)

pRolocdata.Rcheck/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.0320.0000.031
andy20110.0610.0000.061
at_chloro0.1150.0040.119
dunkley20060.1710.0040.175
fabre20155.5200.1345.957
foster20060.0470.0040.052
groen20143.1150.0163.132
hall20090.1970.0120.209
havugimana20120.5250.0120.537
hyperLOPIT20150.0670.0040.071
kirkwood20130.0420.0000.041
kristensen20120.0230.0000.023
nikolovski20120.6800.0040.684
nikolovski20140.2520.0000.251
pRolocdata0.0040.0180.025
pRolocmetadata0.0120.0040.015
tan20090.0170.0000.017
trotter20100.2730.0200.331