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BioC 3.3: CHECK report for mcaGUI on windows2.bioconductor.org

This page was generated on 2015-10-27 12:14:47 -0400 (Tue, 27 Oct 2015).

Package 604/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mcaGUI 1.19.0
Wade K. Copeland
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mcaGUI
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: mcaGUI
Version: 1.19.0
Command: rm -rf mcaGUI.buildbin-libdir mcaGUI.Rcheck && mkdir mcaGUI.buildbin-libdir mcaGUI.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mcaGUI.buildbin-libdir mcaGUI_1.19.0.tar.gz >mcaGUI.Rcheck\00install.out 2>&1 && cp mcaGUI.Rcheck\00install.out mcaGUI-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=mcaGUI.buildbin-libdir --install="check:mcaGUI-install.out" --force-multiarch --no-vignettes --timings mcaGUI_1.19.0.tar.gz
StartedAt: 2015-10-27 03:49:00 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 03:52:44 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 223.7 seconds
RetCode: 0
Status:  OK  
CheckDir: mcaGUI.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mcaGUI.buildbin-libdir mcaGUI.Rcheck && mkdir mcaGUI.buildbin-libdir mcaGUI.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mcaGUI.buildbin-libdir mcaGUI_1.19.0.tar.gz >mcaGUI.Rcheck\00install.out 2>&1 && cp mcaGUI.Rcheck\00install.out mcaGUI-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=mcaGUI.buildbin-libdir --install="check:mcaGUI-install.out" --force-multiarch --no-vignettes --timings mcaGUI_1.19.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/mcaGUI.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mcaGUI/DESCRIPTION' ... OK
* this is package 'mcaGUI' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'iplots'

Depends: includes the non-default packages:
  'lattice' 'MASS' 'proto' 'foreign' 'gWidgets' 'gWidgetsRGtk2'
  'OTUbase' 'vegan' 'bpca'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mcaGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'OTUbase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  'gWidgets' 'gWidgetsRGtk2' 'lattice'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'MASS' 'OTUbase' 'bpca' 'foreign' 'gWidgets' 'gWidgetsRGtk2'
  'lattice' 'proto' 'vegan'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' calls which should be '::':
  'gWidgets:::editFormulaDialog' 'utils:::getCRANmirrors'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'mcaGUI/R/zzz.R':
  .onLoad calls:
    cat("Loading mcaGUI()\n")
    print("You can access the mcaGUI vignette by browsing to:  ")
    print(system.file("doc", "An_Introduction_and_User_Guide_for_mcaGUI.pdf",     package = "mcaGUI"))

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

Found the following possibly unsafe calls:
File 'mcaGUI/R/ibestgui.filemenu.R':
  assignInNamespace("pmg.window", NULL, "ibestGUI")

Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to:  "
[1] ""
GUI requires an interactive environment
Proportion_Or_Count_Reader : .readRDP: warning in read.table(file =
  dirPath, head = F, sep = "\t", stringsAsFactors = F): partial
  argument match of 'head' to 'header'
getAllPackages: warning in .packages(all = TRUE): partial argument
  match of 'all' to 'all.available'
.editDFProperties : <anonymous>: no visible binding for global variable
  'getType'
.editDFProperties : <anonymous>: no visible global function definition
  for 'ggroup'
.editDFProperties : <anonymous>: no visible global function definition
  for 'glabel'
.editDFProperties : <anonymous>: no visible global function definition
  for 'glayout'
.editDFProperties : <anonymous>: no visible global function definition
  for 'gdroplist'
.editDFProperties : <anonymous>: no visible global function definition
  for 'svalue<-'
.editDFProperties : <anonymous>: no visible global function definition
  for 'gedit'
.editDFProperties : <anonymous>: no visible global function definition
  for 'visible<-'
.editDFProperties : <anonymous>: no visible global function definition
  for 'gseparator'
.editDFProperties : <anonymous>: no visible global function definition
  for 'gdf'
.editDFProperties : <anonymous> : getIndex: no visible global function
  definition for 'svalue'
.editDFProperties : <anonymous>: no visible global function definition
  for 'addHandlerChanged'
.editDFProperties : <anonymous> : <anonymous>: no visible global
  function definition for 'svalue'
.editDFProperties : <anonymous> : updateDF: no visible global function
  definition for 'delete'
.editDFProperties : <anonymous> : updateDF: no visible global function
  definition for 'gdf'
.editDFProperties : <anonymous> : updateNames: no visible global
  function definition for 'delete'
.editDFProperties : <anonymous> : updateNames: no visible global
  function definition for 'gdroplist'
.editDFProperties : <anonymous> : updateNames: no visible global
  function definition for 'svalue<-'
.editDFProperties : <anonymous> : updateNames: no visible global
  function definition for 'addHandlerChanged'
.editDFProperties : <anonymous> : updateNames : <anonymous>: no visible
  global function definition for 'svalue'
.editDFProperties : <anonymous> : updateNames : <anonymous>: no visible
  global function definition for 'svalue<-'
.editDFProperties : <anonymous>: no visible global function definition
  for 'svalue'
.editDFProperties : <anonymous>: no visible global function definition
  for 'gconfirm'
.editDFProperties : <anonymous>: no visible global function definition
  for 'dispose'
.newSet : setISetByName: no visible global function definition for
  'iset.list'
.newSet : setISetByName: no visible global function definition for
  'iset.set'
.newSet: no visible global function definition for 'iset.list'
.newSet: no visible global function definition for 'iset.set'
.newSet: no visible global function definition for 'iset.new'
.newSet: no visible global function definition for 'iset.df'
.newSet: no visible global function definition for 'gtable'
.newSet: no visible global function definition for 'adddropsource'
.newSet: no visible global function definition for 'gdroplist'
.newSet: no visible global function definition for 'gimage'
.newSet: no visible global function definition for 'glabel'
.newSet: no visible global function definition for 'gbutton'
.newSet: no visible global function definition for 'gtext'
.newSet: no visible global function definition for 'ggroup'
.newSet: no visible global function definition for 'gpanedgroup'
.newSet: no visible global function definition for 'add'
.newSet: no visible global function definition for 'size<-'
.newSet: no visible global function definition for 'gframe'
.newSet: no visible global function definition for 'addhandlerchanged'
.newSet : <anonymous>: no visible global function definition for
  'svalue'
.newSet : <anonymous>: no visible global function definition for 'ibox'
.newSet : <anonymous>: no visible global function definition for
  'imosaic'
.newSet : <anonymous>: no visible global function definition for 'ipcp'
.newSet : <anonymous>: no visible global function definition for
  'svalue<-'
.newSet: no visible global function definition for 'addhandlerclicked'
.newSet : <anonymous>: no visible global function definition for
  'iset.selected'
.newSet : <anonymous>: no visible global function definition for
  'iset.select'
.newSet : <anonymous>: no visible global function definition for
  'iplot.cur'
.newSet : <anonymous>: no visible global function definition for
  'iplot.list'
.newSet : <anonymous>: no visible global function definition for
  'iplot.set'
.newSet : <anonymous>: no visible global function definition for
  'ggroup'
.newSet : <anonymous>: no visible global function definition for
  'gframe'
.newSet : <anonymous>: no visible global function definition for
  'glabel'
.newSet : <anonymous>: no visible global function definition for
  'adddroptarget'
.newSet : <anonymous>: no visible global function definition for
  'font<-'
.newSet : <anonymous>: no visible global function definition for
  'gcheckbox'
.newSet : <anonymous>: no visible global function definition for
  'gbutton'
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for 'svalue'
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for 'iset.selected'
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for 'iabline'
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for 'ilines'
.newSet : <anonymous>: no visible global function definition for
  'gedit'
.newSet : <anonymous> : <anonymous>: no visible global function
  definition for 'svalue'
.newSet : <anonymous>: no visible global function definition for
  'addSpring'
.newSet : <anonymous> : <anonymous>: no visible global function
  definition for 'dispose'
.newSet : <anonymous>: no visible global function definition for
  'iobj.rm'
.newSet : <anonymous>: no visible global function definition for
  'iobj.cur'
.newSet : <anonymous>: no visible global function definition for
  '.jstrVal'
.newSet : getCurrentPlotNameType: no visible global function definition
  for 'iplot.list'
.newSet : getCurrentPlotNameType: no visible global function definition
  for 'iplot.cur'
.newSet : updateCurrentPlotDescription: no visible global function
  definition for 'svalue<-'
OTUbasereader : openHandler: no visible global function definition for
  'visible<-'
OTUbasereader : closeHandler: no visible global function definition for
  'visible<-'
OTUbasereader: no visible global function definition for 'gwindow'
OTUbasereader: no visible global function definition for 'glayout'
OTUbasereader: no visible global function definition for 'glabel'
OTUbasereader: no visible global function definition for 'gedit'
OTUbasereader: no visible global function definition for 'gfilebrowse'
OTUbasereader: no visible global function definition for 'guiToolkit'
OTUbasereader : setwdHandler: no visible global function definition for
  'svalue'
OTUbasereader: no visible global function definition for
  'addHandlerChanged'
OTUbasereader: no visible global function definition for 'gradio'
OTUbasereader: no visible global function definition for 'gbutton'
OTUbasereader : OTUbase: no visible global function definition for
  'svalue'
OTUbasereader : OTUbase: no visible global function definition for
  'svalue<-'
OTUbasereader : OTUbase: no visible binding for '<<-' assignment to
  'OTUset'
OTUbasereader : OTUbase: no visible global function definition for
  'readOTUset'
OTUbasereader : OTUbase: no visible global function definition for
  'aData'
OTUbasereader : OTUbase: no visible global function definition for
  'sData'
OTUbasereader : OTUbase: no visible global function definition for
  'visible<-'
Proportion_Or_Count_Reader : openHandler: no visible global function
  definition for 'visible<-'
Proportion_Or_Count_Reader : closeHandler: no visible global function
  definition for 'visible<-'
Proportion_Or_Count_Reader: no visible global function definition for
  'gwindow'
Proportion_Or_Count_Reader: no visible global function definition for
  'glayout'
Proportion_Or_Count_Reader: no visible global function definition for
  'glabel'
Proportion_Or_Count_Reader: no visible global function definition for
  'gedit'
Proportion_Or_Count_Reader: no visible global function definition for
  'gfilebrowse'
Proportion_Or_Count_Reader: no visible global function definition for
  'guiToolkit'
Proportion_Or_Count_Reader: no visible global function definition for
  'gradio'
Proportion_Or_Count_Reader: no visible global function definition for
  'gbutton'
Proportion_Or_Count_Reader : createAbundanceTable: no visible global
  function definition for 'svalue'
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
  for global variable 'Sample_Data'
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
  for global variable 'collab2'
Proportion_Or_Count_Reader: no visible global function definition for
  'addHandlerClicked'
Proportion_Or_Count_Reader : new.window : closeHandler2: no visible
  global function definition for 'visible<-'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'gwindow'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'glayout'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'glabel'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'gedit'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'gfilebrowse'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'guiToolkit'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'gradio'
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible global function definition for 'svalue'
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible global function definition for 'glabel'
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible binding for '<<-' assignment to 'collab2'
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible global function definition for 'gdroplist'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'gbutton'
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for 'addHandlerClicked'
RSiteSearch.Dialog: no visible global function definition for 'glayout'
RSiteSearch.Dialog: no visible global function definition for 'ggroup'
RSiteSearch.Dialog: no visible global function definition for 'glabel'
RSiteSearch.Dialog: no visible global function definition for 'gedit'
RSiteSearch.Dialog: no visible global function definition for
  'gdroplist'
RSiteSearch.Dialog: no visible global function definition for
  'gspinbutton'
RSiteSearch.Dialog: no visible global function definition for
  'visible<-'
RSiteSearch.Dialog: no visible global function definition for 'add'
RSiteSearch.Dialog: no visible global function definition for
  'gseparator'
RSiteSearch.Dialog: no visible global function definition for
  'addSpring'
RSiteSearch.Dialog: no visible global function definition for 'gbutton'
RSiteSearch.Dialog : <anonymous>: no visible global function definition
  for 'dispose'
RSiteSearch.Dialog: no visible global function definition for
  'addhandlerclicked'
RSiteSearch.Dialog : <anonymous>: no visible global function definition
  for 'svalue'
as.dLatticeExplorer: no visible global function definition for 'tag'
checkForUpdatesGUI: no visible global function definition for 'ggroup'
checkForUpdatesGUI: no visible global function definition for 'glabel'
checkForUpdatesGUI: no visible global function definition for
  'gstatusbar'
checkForUpdatesGUI: no visible global function definition for
  'visible<-'
checkForUpdatesGUI: no visible global function definition for
  'svalue<-'
clearPanel: no visible global function definition for 'tag'
clearPanel: no visible global function definition for 'tag<-'
clearPlot: no visible global function definition for 'tag<-'
clearPlot: no visible global function definition for 'tag'
clearPlot: no visible global function definition for 'removehandler'
clearPlot: no visible global function definition for 'svalue<-'
cluster: no visible global function definition for 'vegdist'
constructionOfNormal: no visible global function definition for
  'gwindow'
constructionOfNormal : updatePlot: no visible global function
  definition for 'svalue'
constructionOfNormal : updatePlot: no visible binding for global
  variable 'x'
constructionOfNormal: no visible global function definition for
  'gdroplist'
constructionOfNormal: no visible global function definition for
  'addhandlerchanged'
constructionOfNormal : <anonymous>: no visible global function
  definition for 'svalue'
constructionOfNormal : <anonymous>: no visible global function
  definition for 'svalue<-'
constructionOfNormal : <anonymous>: no visible global function
  definition for 'enabled<-'
constructionOfNormal: no visible global function definition for
  'glabel'
constructionOfNormal: no visible global function definition for 'gedit'
constructionOfNormal: no visible global function definition for
  'gcheckbox'
constructionOfNormal: no visible global function definition for
  'ggroup'
constructionOfNormal: no visible global function definition for
  'gframe'
constructionOfNormal: no visible global function definition for
  'glayout'
constructionOfNormal: no visible global function definition for
  'visible<-'
constructionOfNormal: no visible global function definition for 'add'
constructionOfNormal: no visible global function definition for
  'addSpring'
constructionOfNormal: no visible global function definition for
  'gbutton'
constructionOfNormal : <anonymous>: no visible global function
  definition for 'dispose'
constructionOfNormal: no visible global function definition for
  'ggraphics'
dLatticeExplorer: no visible global function definition for 'ggroup'
dLatticeExplorer: no visible global function definition for 'ggraphics'
dLatticeExplorer: no visible global function definition for 'tag<-'
dLatticeExplorer: no visible global function definition for 'add'
dLatticeExplorer: no visible global function definition for 'gframe'
dLatticeExplorer : handler: no visible global function definition for
  'tag'
dLatticeExplorer : handler: no visible global function definition for
  'tag<-'
dLatticeExplorer : handler: no visible global function definition for
  'addhandlerchanged'
dLatticeExplorer: no visible global function definition for
  'adddroptarget'
dLatticeExplorer: no visible global function definition for 'gbutton'
dLatticeExplorer : <anonymous>: no visible global function definition
  for 'svalue<-'
dLatticeExplorer: no visible global function definition for 'addSpring'
dLatticeExplorer: no visible global function definition for 'gdroplist'
dLatticeExplorer : <anonymous>: no visible global function definition
  for 'svalue'
dLatticeExplorer : <anonymous>: no visible global function definition
  for 'tag<-'
dLatticeExplorer: no visible global function definition for 'svalue<-'
dLatticeExplorer: no visible global function definition for 'glabel'
dLatticeExplorer: no visible global function definition for
  'gseparator'
dLatticeExplorer: no visible global function definition for
  'gcheckboxgroup'
dLatticeExplorer: no visible global function definition for
  'addhandlerunrealize'
dSummaryDialog: no visible global function definition for 'ggroup'
dSummaryDialog: no visible global function definition for 'tag<-'
dSummaryDialog: no visible global function definition for 'glayout'
dSummaryDialog: no visible global function definition for 'glabel'
dSummaryDialog: no visible global function definition for 'font<-'
dSummaryDialog: no visible global function definition for 'enabled<-'
dSummaryDialog: no visible global function definition for 'add'
dSummaryDialog: no visible global function definition for 'visible<-'
dSummaryDialog: no visible global function definition for 'addSpring'
dSummaryDialog: no visible global function definition for 'gbutton'
dSummaryDialog: no visible global function definition for 'gdroplist'
dSummaryDialog: no visible global function definition for 'gseparator'
dSummaryDialog: no visible global function definition for 'gtext'
dSummaryDialog: no visible global function definition for
  'addhandlerchanged'
dSummaryDialog : <anonymous>: no visible global function definition for
  'tag'
dSummaryDialog : <anonymous>: no visible global function definition for
  'removehandler'
dSummaryDialog : <anonymous>: no visible global function definition for
  'tag<-'
dSummaryDialog : <anonymous>: no visible global function definition for
  'svalue'
dSummaryDialog: no visible global function definition for
  'adddroptarget'
dSummaryDialog : <anonymous>: no visible global function definition for
  'svalue<-'
dSummaryDialog : <anonymous>: no visible global function definition for
  'addhandlerchanged'
dSummaryDialog : <anonymous>: no visible global function definition for
  'enabled<-'
dSummaryDialog : clear: no visible global function definition for
  'svalue<-'
dSummaryDialog : clear: no visible global function definition for
  'dispose'
dSummaryDialog : clear: no visible global function definition for
  'tag<-'
dSummaryDialog : update: no visible global function definition for
  'tag'
dSummaryDialog : update: no visible global function definition for
  'svalue'
dSummaryDialog : update: no visible global function definition for 'id'
dSummaryDialog : update: no visible global function definition for
  'dispose'
dSummaryDialog : update: no visible global function definition for
  'add'
dSummaryDialog : clearDropHandlers: no visible global function
  definition for 'tag'
dSummaryDialog : clearDropHandlers: no visible global function
  definition for 'removehandler'
dSummaryDialog: no visible global function definition for
  'addhandlerunrealize'
diversityfun: no visible global function definition for 'diversity'
dpqrfuncs: no visible global function definition for 'ggroup'
dpqrfuncs: no visible global function definition for 'glabel'
dpqrfuncs: no visible global function definition for 'gdroplist'
dpqrfuncs: no visible global function definition for 'gedit'
dpqrfuncs: no visible global function definition for 'gcheckbox'
dpqrfuncs: no visible global function definition for 'gtext'
dpqrfuncs: no visible global function definition for 'glayout'
dpqrfuncs: no visible global function definition for 'addSpring'
dpqrfuncs: no visible global function definition for 'gbutton'
dpqrfuncs: no visible global function definition for 'visible<-'
dpqrfuncs: no visible global function definition for
  'addhandlerchanged'
dpqrfuncs : <anonymous>: no visible global function definition for
  'svalue'
dpqrfuncs : <anonymous>: no visible global function definition for
  'svalue<-'
dpqrfuncs : <anonymous>: no visible global function definition for
  'enabled<-'
dpqrfuncs : <anonymous>: no visible global function definition for
  'ghelp'
getCranSiteIfNeeded : handler: no visible global function definition
  for 'svalue'
getCranSiteIfNeeded: no visible global function definition for 'ggroup'
getCranSiteIfNeeded: no visible global function definition for 'glabel'
getCranSiteIfNeeded: no visible global function definition for 'gtable'
getCranSiteIfNeeded: no visible global function definition for 'size<-'
getCranSiteIfNeeded: no visible global function definition for
  'gbasicdialog'
histogramAndDensity: no visible global function definition for
  'gwindow'
histogramAndDensity : updatePlot: no visible global function definition
  for 'svalue'
histogramAndDensity : addDensity: no visible global function definition
  for 'svalue'
histogramAndDensity : addDensity: no visible binding for global
  variable 'x'
histogramAndDensity: no visible global function definition for
  'gdroplist'
histogramAndDensity: no visible global function definition for
  'addhandlerchanged'
histogramAndDensity : <anonymous>: no visible global function
  definition for 'svalue'
histogramAndDensity : <anonymous>: no visible global function
  definition for 'svalue<-'
histogramAndDensity : <anonymous>: no visible global function
  definition for 'enabled<-'
histogramAndDensity: no visible global function definition for 'gradio'
histogramAndDensity: no visible global function definition for
  'gcheckbox'
histogramAndDensity: no visible global function definition for 'glabel'
histogramAndDensity: no visible global function definition for 'gedit'
histogramAndDensity: no visible global function definition for 'ggroup'
histogramAndDensity: no visible global function definition for 'gframe'
histogramAndDensity: no visible global function definition for
  'glayout'
histogramAndDensity: no visible global function definition for
  'visible<-'
histogramAndDensity: no visible global function definition for 'add'
histogramAndDensity: no visible global function definition for
  'addSpring'
histogramAndDensity: no visible global function definition for
  'gbutton'
histogramAndDensity : <anonymous>: no visible global function
  definition for 'dispose'
histogramAndDensity: no visible global function definition for
  'ggraphics'
importFile : <anonymous>: no visible binding for global variable
  'svalue'
importFile : <anonymous>: no visible global function definition for
  'svalue'
importFile : <anonymous>: no visible global function definition for
  'gconfirm'
importFile : <anonymous>: no visible global function definition for
  'dispose'
importFile : <anonymous>: no visible global function definition for
  'gedit'
importFile : <anonymous>: no visible global function definition for
  'ggroup'
importFile : <anonymous>: no visible global function definition for
  'glabel'
importFile : <anonymous>: no visible global function definition for
  'glayout'
importFile : <anonymous>: no visible global function definition for
  'visible<-'
importFile : <anonymous>: no visible global function definition for
  'gframe'
importFile : <anonymous>: no visible global function definition for
  'gdroplist'
importFile : <anonymous>: no visible global function definition for
  'gspinbutton'
importFile : <anonymous> : makePreview: no visible binding for global
  variable 'svalue'
importFile : <anonymous> : makePreview: no visible global function
  definition for 'delete'
importFile : <anonymous> : makePreview: no visible global function
  definition for 'ggroup'
importFile : <anonymous> : makePreview: no visible global function
  definition for 'gdf'
importFile : <anonymous> : <anonymous>: no visible global function
  definition for 'addHandlerChanged'
lsDatasets: no visible global function definition for '.GlobalEnv'
lsFunctions: no visible global function definition for '.GlobalEnv'
lsModels: no visible global function definition for '.GlobalEnv'
lsTs: no visible global function definition for '.GlobalEnv'
mcaGUI: no visible global function definition for 'size<-'
mcaGUI: no visible global function definition for 'gmenu'
mcaGUI: no visible global function definition for 'gnotebook'
mcaGUI: no visible global function definition for 'gstatusbar'
mcaGUI: no visible global function definition for 'ggroup'
mcaGUI: no visible global function definition for 'add'
mcaGUI: no visible binding for global variable 'pmg.user.menu'
mcaGUI: no visible binding for global variable 'pmg.menubar'
mcaGUI: no visible global function definition for 'gvarbrowser'
mcaGUI : <anonymous>: no visible global function definition for
  'svalue'
mcaGUI : <anonymous>: no visible global function definition for 'add'
mcaGUI: no visible global function definition for 'gexpandgroup'
mcaGUI: no visible global function definition for 'visible<-'
mcaGUI: no visible global function definition for 'gpanedgroup'
mcaGUI : <anonymous>: no visible global function definition for
  'dispose'
mcaGUI : <anonymous>: no visible global function definition for 'gfile'
mcaGUI : <anonymous>: no visible global function definition for
  'ggraphicsnotebook'
mcaGUI : <anonymous>: no visible global function definition for
  'focus<-'
mcaGUI : <anonymous>: no visible global function definition for
  'ghelpbrowser'
mcaGUI: no visible global function definition for 'gtoolbar'
mcaGUI: no visible global function definition for 'gimage'
mcaGUI: no visible global function definition for 'addSpace'
mcaGUI: no visible global function definition for 'gseparator'
mcaGUI: no visible global function definition for 'addSpring'
mcaGUI: no visible global function definition for 'adddroptarget'
mcaGUI : <anonymous>: no visible global function definition for
  'svalue<-'
mcaGUI: no visible binding for '<<-' assignment to 'send'
mcaGUI: no visible global function definition for 'gcommandline'
mcaGUI : pmg.data.frame.viewer.nb: no visible global function
  definition for 'gtext'
panel.mean: no visible global function definition for 'panel.abline'
panel.median: no visible global function definition for 'panel.abline'
pmg.about: no visible global function definition for 'ggroup'
pmg.about: no visible global function definition for 'size<-'
pmg.about: no visible global function definition for 'glabel'
pmg.about: no visible global function definition for 'addSpring'
pmg.about: no visible global function definition for 'gbutton'
pmg.about.R: no visible global function definition for 'ggroup'
pmg.about.R: no visible global function definition for 'gimage'
pmg.about.R: no visible global function definition for 'glabel'
pmg.add: no visible global function definition for 'add'
pmg.addMenubar: no visible global function definition for 'add'
pmg.castGUI: no visible global function definition for 'ggroup'
pmg.castGUI: no visible global function definition for 'gedit'
pmg.castGUI: no visible global function definition for 'gtable'
pmg.castGUI: no visible global function definition for 'adddropsource'
pmg.castGUI : <anonymous>: no visible global function definition for
  'svalue'
pmg.castGUI: no visible global function definition for 'glabel'
pmg.castGUI: no visible global function definition for 'font<-'
pmg.castGUI: no visible global function definition for 'gdroplist'
pmg.castGUI: no visible global function definition for 'gbutton'
pmg.castGUI: no visible global function definition for 'glayout'
pmg.castGUI: no visible global function definition for 'visible<-'
pmg.castGUI: no visible global function definition for 'add'
pmg.castGUI: no visible global function definition for 'gseparator'
pmg.castGUI: no visible global function definition for 'gexpandgroup'
pmg.castGUI : getCast: no visible global function definition for
  'svalue'
pmg.castGUI : cleanPreview: no visible global function definition for
  'delete'
pmg.castGUI : cleanPreview: no visible global function definition for
  'glabel'
pmg.castGUI : cleanPreview: no visible global function definition for
  'add'
pmg.castGUI: no visible global function definition for
  'addhandlerchanged'
pmg.castGUI : <anonymous>: no visible global function definition for
  'gmessage'
pmg.castGUI : <anonymous>: no visible global function definition for
  'svalue<-'
pmg.castGUI : formulaDropHandler: no visible global function definition
  for 'svalue'
pmg.castGUI : formulaDropHandler: no visible global function definition
  for 'svalue<-'
pmg.castGUI: no visible global function definition for 'adddroptarget'
pmg.castGUI : updateHandler: no visible global function definition for
  'gmessage'
pmg.castGUI : updateHandler: no visible global function definition for
  'delete'
pmg.castGUI : updateHandler: no visible global function definition for
  'gtable'
pmg.castGUI : updateHandler: no visible global function definition for
  'add'
pmg.castGUI : updateHandler: no visible global function definition for
  'enabled<-'
pmg.castGUI : clearFormulaHandler: no visible global function
  definition for 'svalue<-'
pmg.castGUI : clearFormulaHandler: no visible global function
  definition for 'delete'
pmg.castGUI : clearFormulaHandler: no visible global function
  definition for 'glabel'
pmg.castGUI : clearFormulaHandler: no visible global function
  definition for 'add'
pmg.castGUI : editSubsetHandler: no visible global function definition
  for 'svalue'
pmg.castGUI : editSubsetHandler: no visible global function definition
  for 'gmessage'
pmg.castGUI : editSubsetHandler: no visible global function definition
  for 'editSubsetDialog'
pmg.castGUI : saveAsHandler: no visible global function definition for
  'gmessage'
pmg.castGUI : saveAsHandler: no visible global function definition for
  'svalue'
pmg.castGUI : saveAsHandler: no visible global function definition for
  'gconfirm'
pmg.castGUI : saveAsHandler: no visible global function definition for
  'enabled<-'
pmg.chooseCRANmirror: no visible global function definition for
  'size<-'
pmg.chooseCRANmirror: no visible global function definition for
  'ggroup'
pmg.chooseCRANmirror: no visible global function definition for
  'gtable'
pmg.chooseCRANmirror : <anonymous>: no visible global function
  definition for 'svalue'
pmg.chooseCRANmirror : <anonymous>: no visible global function
  definition for 'dispose'
pmg.chooseCRANmirror: no visible global function definition for 'add'
pmg.chooseCRANmirror: no visible global function definition for
  'gstatusbar'
pmg.chooseCRANmirror: no visible global function definition for
  'visible<-'
pmg.closeAll: no visible global function definition for 'dispose'
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for 'ggroup'
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for 'add'
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for 'glabel'
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for 'gseparator'
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for 'glayout'
pmg.edit.dataframe.properties.dialog : selHandler: no visible global
  function definition for 'svalue'
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for 'gdroplist'
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for 'gbutton'
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for 'visible<-'
pmg.eval: no visible global function definition for 'svalue<-'
pmg.gw: no visible global function definition for 'ggenericwidget'
pmg.gw: no visible global function definition for 'ggroup'
pmg.gw: no visible global function definition for 'add'
pmg.help: no visible global function definition for 'ghelpbrowser'
pmg.help: no visible global function definition for 'focus<-'
pmg.help: no visible global function definition for 'add'
pmg.installCRANPackage : addPackageList: no visible global function
  definition for 'svalue<-'
pmg.installCRANPackage : addPackageList: no visible global function
  definition for 'svalue'
pmg.installCRANPackage : addPackageList: no visible global function
  definition for 'enabled<-'
pmg.installCRANPackage: no visible global function definition for
  'ggroup'
pmg.installCRANPackage: no visible global function definition for
  'glayout'
pmg.installCRANPackage: no visible global function definition for
  'glabel'
pmg.installCRANPackage: no visible global function definition for
  'gedit'
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for 'svalue'
pmg.installCRANPackage: no visible global function definition for
  'gbutton'
pmg.installCRANPackage: no visible global function definition for
  'addhandlerclicked'
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for 'svalue<-'
pmg.installCRANPackage: no visible global function definition for
  'gdroplist'
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for 'gfile'
pmg.installCRANPackage : <anonymous> : <anonymous>: no visible global
  function definition for 'svalue<-'
pmg.installCRANPackage : <anonymous> : <anonymous>: no visible global
  function definition for 'svalue'
pmg.installCRANPackage: no visible global function definition for
  'gstatusbar'
pmg.installCRANPackage: no visible global function definition for
  'enabled<-'
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for 'dispose'
pmg.installCRANPackage: no visible global function definition for 'add'
pmg.installCRANPackage: no visible global function definition for
  'gtable'
pmg.installCRANPackage: no visible global function definition for
  'size<-'
pmg.installCRANPackage: no visible global function definition for
  'visible<-'
pmg.installCRANPackage: no visible global function definition for
  'gseparator'
pmg.installCRANPackage: no visible global function definition for
  'addSpring'
pmg.iplots: no visible global function definition for 'ggroup'
pmg.iplots : <anonymous>: no visible global function definition for
  'dispose'
pmg.iplots: no visible global function definition for 'gtoolbar'
pmg.iplots: no visible global function definition for 'gnotebook'
pmg.iplots: no visible global function definition for 'add'
pmg.iplots: no visible global function definition for 'size<-'
pmg.iplots : addNewDF: no visible global function definition for
  'ggroup'
pmg.iplots : addNewDF: no visible global function definition for 'add'
pmg.iplots : addNewDF: no visible global function definition for
  'glabel'
pmg.iplots : addNewDF: no visible global function definition for
  'gtable'
pmg.iplots : addNewDF: no visible global function definition for
  'addhandlerdoubleclick'
pmg.iplots : addNewDF : <anonymous>: no visible global function
  definition for 'svalue'
pmg.iplots : addNewDF : <anonymous>: no visible global function
  definition for 'add'
pmg.iplots : addNewDF : <anonymous>: no visible global function
  definition for 'dispose'
pmg.iplots : addNewDF: no visible global function definition for
  'gmessage'
pmg.loadPackages: no visible global function definition for 'size<-'
pmg.loadPackages: no visible global function definition for 'ggroup'
pmg.loadPackages : packageHandler: no visible global function
  definition for 'svalue'
pmg.loadPackages : packageHandler: no visible global function
  definition for 'svalue<-'
pmg.loadPackages: no visible global function definition for 'gtable'
pmg.loadPackages: no visible global function definition for 'addSpring'
pmg.loadPackages: no visible global function definition for 'gbutton'
pmg.loadPackages : <anonymous>: no visible global function definition
  for 'dispose'
pmg.loadPackages: no visible global function definition for
  'gstatusbar'
pmg.meltGUI : getMeltedObject: no visible global function definition
  for 'svalue'
pmg.meltGUI : getMeltedObject: no visible global function definition
  for 'gmessage'
pmg.meltGUI: no visible global function definition for 'ggroup'
pmg.meltGUI: no visible global function definition for 'glabel'
pmg.meltGUI: no visible global function definition for 'glayout'
pmg.meltGUI: no visible global function definition for 'gedit'
pmg.meltGUI: no visible global function definition for 'gtable'
pmg.meltGUI: no visible global function definition for 'size<-'
pmg.meltGUI: no visible global function definition for 'gdroplist'
pmg.meltGUI: no visible global function definition for 'gbutton'
pmg.meltGUI: no visible global function definition for 'visible<-'
pmg.meltGUI: no visible global function definition for 'add'
pmg.meltGUI: no visible global function definition for 'gseparator'
pmg.meltGUI: no visible global function definition for 'gexpandgroup'
pmg.meltGUI: no visible global function definition for 'enabled<-'
pmg.meltGUI: no visible global function definition for
  'addhandlerchanged'
pmg.meltGUI : <anonymous>: no visible global function definition for
  'svalue'
pmg.meltGUI : <anonymous>: no visible global function definition for
  'gmessage'
pmg.meltGUI : <anonymous>: no visible global function definition for
  'svalue<-'
pmg.meltGUI : <anonymous>: no visible global function definition for
  'delete'
pmg.meltGUI : <anonymous>: no visible global function definition for
  'gtable'
pmg.meltGUI : <anonymous>: no visible global function definition for
  'add'
pmg.meltGUI : <anonymous>: no visible global function definition for
  'enabled<-'
pmg.meltGUI : handler: no visible global function definition for
  'svalue'
pmg.meltGUI : handler: no visible global function definition for
  'gmessage'
pmg.meltGUI : handler: no visible global function definition for
  'gconfirm'
pmg.meltGUI : handler: no visible global function definition for
  'enabled<-'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'ggroup'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'glayout'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'gfilebrowse'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'glabel'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'font<-'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'gseparator'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'gedit'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'gdroplist'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'visible<-'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'svalue'
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for 'dispose'
pmg.subset.dialog: no visible global function definition for 'ggroup'
pmg.subset.dialog: no visible global function definition for 'gframe'
pmg.subset.dialog: no visible global function definition for 'glayout'
pmg.subset.dialog: no visible global function definition for 'glabel'
pmg.subset.dialog: no visible global function definition for 'gedit'
pmg.subset.dialog: no visible global function definition for 'gbutton'
pmg.subset.dialog : <anonymous>: no visible global function definition
  for 'editSubsetDialog'
pmg.subset.dialog : <anonymous>: no visible global function definition
  for 'svalue'
pmg.subset.dialog : <anonymous>: no visible global function definition
  for 'editSelectDialog'
pmg.subset.dialog: no visible global function definition for 'gradio'
pmg.subset.dialog : <anonymous>: no visible global function definition
  for 'svalue<-'
pmg.subset.dialog: no visible global function definition for 'add'
pmg.subset.dialog: no visible global function definition for
  'visible<-'
pmg.viewDataSets: no visible global function definition for 'size<-'
pmg.viewDataSets: no visible global function definition for 'ggroup'
pmg.viewDataSets : dataSetHandler: no visible global function
  definition for 'svalue'
pmg.viewDataSets : dataSetHandler: no visible global function
  definition for 'svalue<-'
pmg.viewDataSets: no visible global function definition for 'gtable'
pmg.viewDataSets: no visible global function definition for 'add'
pmg.viewDataSets: no visible global function definition for 'addSpring'
pmg.viewDataSets: no visible global function definition for 'gbutton'
pmg.viewDataSets : <anonymous>: no visible global function definition
  for 'dispose'
pmg.viewDataSets: no visible global function definition for
  'gstatusbar'
pmgIplotInstructions: no visible global function definition for 'gtext'
pmgIplotInstructions: no visible global function definition for 'add'
pmgSummary.default: no visible global function definition for 'svalue'
pmgSummary.default: no visible global function definition for 'ggroup'
pmgSummary.default: no visible global function definition for
  'stockIconFromClass'
pmgSummary.default: no visible global function definition for 'add'
pmgSummary.default: no visible global function definition for 'gimage'
pmgSummary.default: no visible global function definition for 'glayout'
pmgSummary.default: no visible global function definition for 'glabel'
pmgSummary.default: no visible global function definition for
  'svalue<-'
pmgSummary.default: no visible global function definition for 'gdf'
pmgSummary.default: no visible global function definition for 'gtext'
pmgSummary.default: no visible global function definition for
  'enabled<-'
pmgSummary.default: no visible global function definition for
  'visible<-'
principle_component: no visible global function definition for 'bpca'
probabilityCalculator: no visible global function definition for
  'gwindow'
probabilityCalculator : initOptions: no visible global function
  definition for 'svalue'
probabilityCalculator : initOptions: no visible global function
  definition for 'svalue<-'
probabilityCalculator : updatePlot: no visible global function
  definition for 'svalue'
probabilityCalculator : updatePlot: no visible global function
  definition for 'svalue<-'
probabilityCalculator : updatePlot: no visible binding for global
  variable 'x'
probabilityCalculator: no visible global function definition for
  'gdroplist'
probabilityCalculator: no visible global function definition for
  'addhandlerchanged'
probabilityCalculator : <anonymous>: no visible global function
  definition for 'svalue'
probabilityCalculator : <anonymous>: no visible global function
  definition for 'svalue<-'
probabilityCalculator : <anonymous>: no visible global function
  definition for 'enabled<-'
probabilityCalculator: no visible global function definition for
  'gradio'
probabilityCalculator: no visible global function definition for
  'glabel'
probabilityCalculator: no visible global function definition for
  'gedit'
probabilityCalculator: no visible global function definition for
  'ggroup'
probabilityCalculator: no visible global function definition for
  'gframe'
probabilityCalculator: no visible global function definition for
  'glayout'
probabilityCalculator: no visible global function definition for
  'visible<-'
probabilityCalculator: no visible global function definition for 'add'
probabilityCalculator: no visible global function definition for
  'addSpring'
probabilityCalculator: no visible global function definition for
  'gbutton'
probabilityCalculator : <anonymous>: no visible global function
  definition for 'dispose'
probabilityCalculator: no visible global function definition for
  'ggraphics'
qplotGUI : getValueFromString: no visible global function definition
  for 'svalue'
qplotGUI: no visible global function definition for 'gnotebook'
qplotGUI: no visible global function definition for 'ggroup'
qplotGUI: no visible global function definition for 'glayout'
qplotGUI: no visible global function definition for 'gdroplist'
qplotGUI: no visible global function definition for 'gedit'
qplotGUI: no visible global function definition for 'gseparator'
qplotGUI: no visible global function definition for 'gtable'
qplotGUI: no visible global function definition for 'size<-'
qplotGUI: no visible global function definition for 'glabel'
qplotGUI: no visible global function definition for 'gbutton'
qplotGUI : <anonymous>: no visible global function definition for
  'svalue'
qplotGUI: no visible global function definition for 'visible<-'
qplotGUI: no visible global function definition for 'svalue<-'
qplotGUI : updateGeoms: no visible global function definition for
  'svalue'
qplotGUI : updateExtraArgs: no visible global function definition for
  'svalue'
qplotGUI : updateExtraArgs: no visible global function definition for
  'svalue<-'
qplotGUI : updateExtraArgs: no visible global function definition for
  'dispose'
qplotGUI : updateExtraArgs: no visible global function definition for
  'ggroup'
qplotGUI : updateExtraArgs: no visible global function definition for
  'glabel'
qplotGUI : updateExtraArgs: no visible global function definition for
  'gdroplist'
qplotGUI : updateExtraArgs: no visible global function definition for
  'gedit'
qplotGUI : getExtraArgValues: no visible global function definition for
  'svalue'
qplotGUI : updateGraphic: no visible binding for global variable
  'svalue'
qplotGUI : updateGraphic.paste: no visible binding for global variable
  'svalue'
qplotGUI : <anonymous>: no visible global function definition for
  'addHandlerChanged'
qplotGUI: no visible global function definition for 'addHandlerClicked'
qplotGUI: no visible global function definition for 'addHandlerChanged'
qplotGUI: no visible global function definition for 'addDropTarget'
quantileWidget: no visible global function definition for 'ggroup'
quantileWidget: no visible global function definition for 'tag<-'
quantileWidget: no visible global function definition for 'gimage'
quantileWidget: no visible global function definition for 'gseparator'
quantileWidget: no visible global function definition for 'glayout'
quantileWidget: no visible global function definition for 'glabel'
quantileWidget: no visible global function definition for 'font<-'
quantileWidget: no visible global function definition for 'gdroplist'
quantileWidget: no visible global function definition for 'add'
quantileWidget: no visible global function definition for 'visible<-'
quantileWidget: no visible global function definition for 'gtext'
quantileWidget: no visible global function definition for
  'addhandlerchanged'
quantileWidget : <anonymous>: no visible global function definition for
  'tag'
quantileWidget : <anonymous>: no visible global function definition for
  'removehandler'
quantileWidget : <anonymous>: no visible global function definition for
  'tag<-'
quantileWidget : <anonymous>: no visible global function definition for
  'svalue'
quantileWidget: no visible global function definition for
  'adddroptarget'
quantileWidget : <anonymous>: no visible global function definition for
  'svalue<-'
quantileWidget : <anonymous>: no visible global function definition for
  'addhandlerchanged'
quantileWidget : update: no visible global function definition for
  'svalue'
quantileWidget : update: no visible global function definition for
  'tag'
quantileWidget : update: no visible global function definition for
  'svalue<-'
quantileWidget : update: no visible global function definition for
  'dispose'
quantileWidget : update: no visible global function definition for
  'add'
repeatTrialsGUI: no visible global function definition for 'gframe'
repeatTrialsGUI: no visible global function definition for 'glayout'
repeatTrialsGUI: no visible global function definition for 'gedit'
repeatTrialsGUI: no visible global function definition for 'gseparator'
repeatTrialsGUI: no visible global function definition for 'gdroplist'
repeatTrialsGUI: no visible global function definition for 'ggroup'
repeatTrialsGUI: no visible global function definition for 'gbutton'
repeatTrialsGUI: no visible global function definition for 'addSpace'
repeatTrialsGUI : <anonymous>: no visible global function definition
  for 'ghelp'
repeatTrialsGUI: no visible global function definition for 'visible<-'
repeatTrialsGUI: no visible global function definition for
  'addHandlerClicked'
repeatTrialsGUI : <anonymous>: no visible global function definition
  for 'svalue'
richness : <anonymous>: no visible global function definition for
  'estimateR'
selectFile: no visible global function definition for 'gfile'
updateLatticeOptions: no visible global function definition for 'tag'
updateLatticeOptions: no visible global function definition for
  'svalue<-'
updateLatticeOptions: no visible global function definition for 'tag<-'
updatePanel: no visible global function definition for 'tag'
updatedLatticeExplorer: no visible global function definition for 'tag'
updatedLatticeExplorer : <anonymous>: no visible global function
  definition for 'id'
updatedLatticeExplorer : <anonymous>: no visible global function
  definition for 'svalue'
updatedLatticeExplorer: no visible global function definition for
  'svalue'
updatedLatticeExplorer: no visible global function definition for
  'shingle'
viewDemos.Dialog: no visible global function definition for 'gtable'
viewDemos.Dialog: no visible global function definition for
  'addhandlerdoubleclick'
viewDemos.Dialog : <anonymous>: no visible global function definition
  for 'svalue'
viewDemos.Dialog: no visible global function definition for 'ggroup'
viewDemos.Dialog: no visible global function definition for 'add'
viewDemos.Dialog: no visible global function definition for 'addSpring'
viewDemos.Dialog: no visible global function definition for 'gbutton'
viewDemos.Dialog : <anonymous>: no visible global function definition
  for 'dispose'
viewDemos.Dialog: no visible global function definition for 'size<-'
viewVignettes.Dialog : defaultHandler: no visible global function
  definition for 'svalue'
viewVignettes.Dialog: no visible global function definition for
  'gtable'
viewVignettes.Dialog: no visible global function definition for
  'ggroup'
viewVignettes.Dialog: no visible global function definition for 'add'
viewVignettes.Dialog: no visible global function definition for
  'addSpring'
viewVignettes.Dialog: no visible global function definition for
  'gbutton'
viewVignettes.Dialog : <anonymous>: no visible global function
  definition for 'dispose'
viewVignettes.Dialog: no visible global function definition for
  'size<-'
Undefined global functions or variables:
  .GlobalEnv .jstrVal Sample_Data aData add addDropTarget
  addHandlerChanged addHandlerClicked addSpace addSpring adddropsource
  adddroptarget addhandlerchanged addhandlerclicked
  addhandlerdoubleclick addhandlerunrealize bpca collab2 delete dispose
  diversity editSelectDialog editSubsetDialog enabled<- estimateR
  focus<- font<- gbasicdialog gbutton gcheckbox gcheckboxgroup
  gcommandline gconfirm gdf gdroplist gedit getType gexpandgroup gfile
  gfilebrowse gframe ggenericwidget ggraphics ggraphicsnotebook ggroup
  ghelp ghelpbrowser gimage glabel glayout gmenu gmessage gnotebook
  gpanedgroup gradio gseparator gspinbutton gstatusbar gtable gtext
  gtoolbar guiToolkit gvarbrowser gwindow iabline ibox id ilines
  imosaic iobj.cur iobj.rm ipcp iplot.cur iplot.list iplot.set iset.df
  iset.list iset.new iset.select iset.selected iset.set panel.abline
  pmg.menubar pmg.user.menu readOTUset removehandler sData shingle
  size<- stockIconFromClass svalue svalue<- tag tag<- vegdist visible<-
  x
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
** running examples for arch 'x64' ... [9s] OK
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'c:/biocbld/bbs-3.3-bioc/meat/mcaGUI.Rcheck/00check.log'
for details.


mcaGUI.Rcheck/00install.out:


install for i386

* installing *source* package 'mcaGUI' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to:  "
[1] ""
GUI requires an interactive environment

install for x64

* installing *source* package 'mcaGUI' ...
** testing if installed package can be loaded
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to:  "
[1] ""
GUI requires an interactive environment
* MD5 sums
packaged installation of 'mcaGUI' as mcaGUI_1.19.0.zip
* DONE (mcaGUI)

mcaGUI.Rcheck/examples_i386/mcaGUI-Ex.timings:

nameusersystemelapsed
mcaGUI000
pmgDynamic000
pmgRepeatTrials0.150.000.16

mcaGUI.Rcheck/examples_x64/mcaGUI-Ex.timings:

nameusersystemelapsed
mcaGUI000
pmgDynamic000
pmgRepeatTrials0.210.000.20