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BioC 3.3: INSTALL report for GLAD on windows2.bioconductor.org

This page was generated on 2015-10-27 12:13:59 -0400 (Tue, 27 Oct 2015).

Package 442/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GLAD 2.35.0
Philippe Hupe
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GLAD
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GLAD
Version: 2.35.0
Command: C:\cygwin64\bin\curl.exe -O http://linux2.bioconductor.org/BBS/3.3/bioc/src/contrib/GLAD_2.35.0.tar.gz && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch GLAD_2.35.0.tar.gz && rm GLAD_2.35.0.tar.gz
StartedAt: 2015-10-26 21:01:25 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 21:01:43 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 17.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin64\bin\curl.exe -O http://linux2.bioconductor.org/BBS/3.3/bioc/src/contrib/GLAD_2.35.0.tar.gz && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch GLAD_2.35.0.tar.gz && rm GLAD_2.35.0.tar.gz
###
##############################################################################
##############################################################################


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100  385k  100  385k    0     0  46.1M      0 --:--:-- --:--:-- --:--:-- 94.1M

install for i386

* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'GLAD' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c BkpInfo.cpp -o BkpInfo.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c HaarSeg.cpp -o HaarSeg.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c MoveBkp.cpp -o MoveBkp.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c OutliersGNL.cpp -o OutliersGNL.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c chrBreakpoints.cpp -o chrBreakpoints.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c cutree.cpp -o cutree.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c daglad.cpp -o daglad.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c distance.cpp -o distance.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c filterBkp.cpp -o filterBkp.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c findCluster.cpp -o findCluster.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c glad-utils.cpp -o glad-utils.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c hclust.cpp -o hclust.o
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c laws.c -o laws.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c loopRemove.cpp -o loopRemove.o
g++ -m32 -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -Lc:/gsl/i386/lib -lgsl -lgslcblas -lm -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/GLAD/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'GLAD' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c BkpInfo.cpp -o BkpInfo.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c HaarSeg.cpp -o HaarSeg.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c MoveBkp.cpp -o MoveBkp.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c OutliersGNL.cpp -o OutliersGNL.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c chrBreakpoints.cpp -o chrBreakpoints.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c cutree.cpp -o cutree.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c daglad.cpp -o daglad.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c distance.cpp -o distance.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c filterBkp.cpp -o filterBkp.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c findCluster.cpp -o findCluster.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c glad-utils.cpp -o glad-utils.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c hclust.cpp -o hclust.o
gcc -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c laws.c -o laws.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I/src/include -Ic:/gsl/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c loopRemove.cpp -o loopRemove.o
g++ -m64 -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -Lc:/gsl/x64/lib -lgsl -lgslcblas -lm -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/GLAD/libs/x64
** testing if installed package can be loaded
* DONE (GLAD)