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BioC 3.3: INSTALL report for DESeq2 on windows2.bioconductor.org

This page was generated on 2015-10-27 12:15:12 -0400 (Tue, 27 Oct 2015).

Package 269/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq2 1.11.1
Michael Love
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DESeq2
Last Changed Rev: 109672 / Revision: 109948
Last Changed Date: 2015-10-15 16:58:48 -0400 (Thu, 15 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DESeq2
Version: 1.11.1
Command: C:\cygwin64\bin\curl.exe -O http://linux2.bioconductor.org/BBS/3.3/bioc/src/contrib/DESeq2_1.11.1.tar.gz && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch DESeq2_1.11.1.tar.gz && rm DESeq2_1.11.1.tar.gz
StartedAt: 2015-10-26 21:09:44 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 21:10:25 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 41.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin64\bin\curl.exe -O http://linux2.bioconductor.org/BBS/3.3/bioc/src/contrib/DESeq2_1.11.1.tar.gz && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch DESeq2_1.11.1.tar.gz && rm DESeq2_1.11.1.tar.gz
###
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##############################################################################


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install for i386

* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'DESeq2' ...
** libs
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"c:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c DESeq2.cpp -o DESeq2.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"c:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -Lc:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lRlapack -Lc:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/DESeq2/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'DESeq2' ...
** libs
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"c:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c DESeq2.cpp -o DESeq2.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG    -I"c:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m64 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -Lc:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lRlapack -Lc:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/DESeq2/libs/x64
** testing if installed package can be loaded
* DONE (DESeq2)