BioC experimental data: CHECK report for hapmapsnp6 on moscato1

Package: hapmapsnp6

Version: 1.12.0

Command: rm -rf hapmapsnp6.buildbin-libdir hapmapsnp6.Rcheck && mkdir hapmapsnp6.buildbin-libdir hapmapsnp6.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hapmapsnp6.buildbin-libdir hapmapsnp6_1.12.0.tar.gz >hapmapsnp6.Rcheck\00install.out 2>&1 && cp hapmapsnp6.Rcheck\00install.out hapmapsnp6-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=hapmapsnp6.buildbin-libdir --install="check:hapmapsnp6-install.out" --force-multiarch --no-vignettes --timings hapmapsnp6_1.12.0.tar.gz

StartedAt: 2016-04-20 14:10:32 -0700 (Wed, 20 Apr 2016)

EndedAt: 2016-04-20 14:22:27 -0700 (Wed, 20 Apr 2016)

EllapsedTime: 715.2 seconds

RetCode: 0

Status:  OK

CheckDir: hapmapsnp6.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf hapmapsnp6.buildbin-libdir hapmapsnp6.Rcheck && mkdir hapmapsnp6.buildbin-libdir hapmapsnp6.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hapmapsnp6.buildbin-libdir hapmapsnp6_1.12.0.tar.gz >hapmapsnp6.Rcheck\00install.out 2>&1 && cp hapmapsnp6.Rcheck\00install.out hapmapsnp6-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=hapmapsnp6.buildbin-libdir --install="check:hapmapsnp6-install.out" --force-multiarch --no-vignettes --timings hapmapsnp6_1.12.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/hapmapsnp6.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hapmapsnp6/DESCRIPTION' ... OK
* this is package 'hapmapsnp6' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hapmapsnp6' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 380.8Mb
  sub-directories of 1Mb or more:
    celFiles  197.6Mb
    data      183.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [36s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
crlmmResult 28.73   0.31   31.61
** running examples for arch 'x64' ... [26s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
crlmmResult 24.74   0.45   25.23
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/hapmapsnp6.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'hapmapsnp6' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'hapmapsnp6' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hapmapsnp6' as hapmapsnp6_1.12.0.zip
* DONE (hapmapsnp6)

name	user	system	elapsed
crlmmResult	28.73	0.31	31.61
hapmapsnp6-package	0	0	0

name	user	system	elapsed
crlmmResult	24.74	0.45	25.23
hapmapsnp6-package	0	0	0