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BioC experimental data: CHECK report for JASPAR2014 on windows1.bioconductor.org

This page was generated on 2015-10-24 18:52:53 -0400 (Sat, 24 Oct 2015).

Package 137/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
JASPAR2014 1.6.0
Ge Tan
Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/JASPAR2014
Last Changed Rev: 3460 / Revision: 3473
Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: JASPAR2014
Version: 1.6.0
Command: rm -rf JASPAR2014.buildbin-libdir JASPAR2014.Rcheck && mkdir JASPAR2014.buildbin-libdir JASPAR2014.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=JASPAR2014.buildbin-libdir JASPAR2014_1.6.0.tar.gz >JASPAR2014.Rcheck\00install.out 2>&1 && cp JASPAR2014.Rcheck\00install.out JASPAR2014-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=JASPAR2014.buildbin-libdir --install="check:JASPAR2014-install.out" --force-multiarch --no-vignettes --timings JASPAR2014_1.6.0.tar.gz
StartedAt: 2015-10-24 15:07:32 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 15:10:11 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 158.7 seconds
RetCode: 0
Status:  OK  
CheckDir: JASPAR2014.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf JASPAR2014.buildbin-libdir JASPAR2014.Rcheck && mkdir JASPAR2014.buildbin-libdir JASPAR2014.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=JASPAR2014.buildbin-libdir JASPAR2014_1.6.0.tar.gz >JASPAR2014.Rcheck\00install.out 2>&1 && cp JASPAR2014.Rcheck\00install.out JASPAR2014-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=JASPAR2014.buildbin-libdir --install="check:JASPAR2014-install.out" --force-multiarch --no-vignettes --timings JASPAR2014_1.6.0.tar.gz
###
##############################################################################
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/JASPAR2014.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'JASPAR2014/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'JASPAR2014' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'JASPAR2014' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 69.9Mb
  sub-directories of 1Mb or more:
    data     49.5Mb
    extdata  20.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [3s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/biocbld/bbs-3.2-data-experiment/meat/JASPAR2014.Rcheck/00check.log'
for details.


JASPAR2014.Rcheck/00install.out:


install for i386

* installing *source* package 'JASPAR2014' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'JASPAR2014' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'JASPAR2014' as JASPAR2014_1.6.0.zip
* DONE (JASPAR2014)

JASPAR2014.Rcheck/examples_i386/JASPAR2014-Ex.timings:

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JASPAR2014-package000
JASPAR2014SitesSeqs000

JASPAR2014.Rcheck/examples_x64/JASPAR2014-Ex.timings:

nameusersystemelapsed
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JASPAR2014-package000
JASPAR2014SitesSeqs000