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BioC experimental data: CHECK report for geneLenDataBase on zin1

This page was generated on 2015-08-22 17:43:38 -0700 (Sat, 22 Aug 2015).

Package 98/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.5.0
Nadia Davidson
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3281 / Revision: 3391
Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: geneLenDataBase
Version: 1.5.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.5.0.tar.gz
StartedAt: 2015-08-22 08:07:39 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 08:12:43 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 304.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [16s/17s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [70s/70s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0920.0080.099
anoCar1.genscan.LENGTH0.0590.0080.067
anoCar1.xenoRefGene.LENGTH1.3050.0081.313
anoGam1.ensGene.LENGTH0.0750.0170.091
anoGam1.geneid.LENGTH0.0420.0350.077
anoGam1.genscan.LENGTH0.0510.0170.068
apiMel1.genscan.LENGTH0.0420.0160.058
apiMel2.ensGene.LENGTH0.1230.0240.147
apiMel2.geneid.LENGTH0.0590.0190.079
apiMel2.genscan.LENGTH0.0370.0160.053
aplCal1.xenoRefGene.LENGTH0.5530.0120.563
bosTau2.geneSymbol.LENGTH0.0430.0160.061
bosTau2.geneid.LENGTH0.4970.0030.500
bosTau2.genscan.LENGTH0.0900.0130.103
bosTau2.refGene.LENGTH0.0550.0080.063
bosTau2.sgpGene.LENGTH0.1150.0000.114
bosTau3.ensGene.LENGTH0.1190.0240.143
bosTau3.geneSymbol.LENGTH0.0410.0120.053
bosTau3.geneid.LENGTH0.1710.0110.184
bosTau3.genscan.LENGTH0.0780.0090.085
bosTau3.refGene.LENGTH0.0420.0110.053
bosTau3.sgpGene.LENGTH0.1060.0240.130
bosTau4.ensGene.LENGTH0.2170.0160.233
bosTau4.geneSymbol.LENGTH0.0400.0150.056
bosTau4.genscan.LENGTH0.1170.0040.122
bosTau4.nscanGene.LENGTH0.0240.0190.044
bosTau4.refGene.LENGTH0.0320.0160.048
braFlo1.xenoRefGene.LENGTH0.5230.0080.531
caeJap1.xenoRefGene.LENGTH0.6710.0050.674
caePb1.xenoRefGene.LENGTH0.4850.0000.486
caePb2.xenoRefGene.LENGTH0.5030.0000.503
caeRem2.xenoRefGene.LENGTH0.4320.0090.443
caeRem3.xenoRefGene.LENGTH0.6830.0040.690
calJac1.genscan.LENGTH0.1030.0080.111
calJac1.nscanGene.LENGTH0.1130.0000.113
calJac1.xenoRefGene.LENGTH0.8740.0030.883
canFam1.ensGene.LENGTH0.4800.0120.491
canFam1.geneSymbol.LENGTH0.0080.0000.008
canFam1.genscan.LENGTH0.0600.0040.064
canFam1.nscanGene.LENGTH0.0610.0000.061
canFam1.refGene.LENGTH0.0070.0000.007
canFam1.xenoRefGene.LENGTH0.7130.0160.729
canFam2.ensGene.LENGTH0.1950.0080.203
canFam2.geneSymbol.LENGTH0.0080.0000.008
canFam2.genscan.LENGTH0.0610.0040.065
canFam2.nscanGene.LENGTH0.0680.0040.072
canFam2.refGene.LENGTH0.0000.0040.008
canFam2.xenoRefGene.LENGTH0.7400.0200.761
cavPor3.ensGene.LENGTH0.3970.0280.425
cavPor3.genscan.LENGTH0.0860.0080.096
cavPor3.nscanGene.LENGTH0.0640.0080.070
cavPor3.xenoRefGene.LENGTH0.7010.0200.723
cb1.xenoRefGene.LENGTH0.5760.0160.609
cb3.xenoRefGene.LENGTH0.4090.0000.409
ce2.geneSymbol.LENGTH0.1230.0240.151
ce2.geneid.LENGTH0.0660.0000.067
ce2.refGene.LENGTH0.0600.0440.104
ce4.geneSymbol.LENGTH0.0750.0280.103
ce4.refGene.LENGTH0.0910.0080.098
ce4.xenoRefGene.LENGTH0.1250.0040.129
ce6.ensGene.LENGTH0.0950.0080.103
ce6.geneSymbol.LENGTH0.0750.0280.103
ce6.refGene.LENGTH0.0820.0200.102
ce6.xenoRefGene.LENGTH0.0760.0040.080
ci1.geneSymbol.LENGTH0.0080.0000.008
ci1.refGene.LENGTH0.0020.0040.006
ci1.xenoRefGene.LENGTH0.1840.0000.184
ci2.ensGene.LENGTH0.3850.0000.384
ci2.geneSymbol.LENGTH0.0070.0000.006
ci2.refGene.LENGTH0.0060.0000.007
ci2.xenoRefGene.LENGTH0.3200.0000.319
danRer3.ensGene.LENGTH0.1300.0080.137
danRer3.geneSymbol.LENGTH0.0640.0160.080
danRer3.refGene.LENGTH0.0530.0240.077
danRer4.ensGene.LENGTH0.120.000.12
danRer4.geneSymbol.LENGTH0.0660.0080.074
danRer4.genscan.LENGTH0.0930.0040.096
danRer4.nscanGene.LENGTH0.0840.0160.104
danRer4.refGene.LENGTH0.0610.0160.077
danRer5.ensGene.LENGTH0.1250.0000.125
danRer5.geneSymbol.LENGTH0.0550.0120.069
danRer5.refGene.LENGTH0.0450.0200.065
danRer5.vegaGene.LENGTH0.0900.0080.099
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.1430.0200.163
danRer6.geneSymbol.LENGTH0.0620.0080.070
danRer6.refGene.LENGTH0.0520.0160.067
danRer6.xenoRefGene.LENGTH0.9610.0000.960
dm1.geneSymbol.LENGTH0.0860.0160.102
dm1.genscan.LENGTH0.0270.0120.039
dm1.refGene.LENGTH0.0640.0320.095
dm2.geneSymbol.LENGTH0.0800.0240.104
dm2.geneid.LENGTH0.0440.0160.060
dm2.genscan.LENGTH0.0330.0080.041
dm2.nscanGene.LENGTH0.0590.0000.059
dm2.refGene.LENGTH0.0900.0120.102
dm3.geneSymbol.LENGTH0.1200.0040.124
dm3.nscanPasaGene.LENGTH0.0590.0200.079
dm3.refGene.LENGTH0.0660.0000.066
dp2.genscan.LENGTH0.0310.0120.043
dp2.xenoRefGene.LENGTH0.3020.0000.301
dp3.geneid.LENGTH0.0560.0080.061
dp3.genscan.LENGTH0.0360.0000.038
dp3.xenoRefGene.LENGTH0.1160.0200.135
droAna1.geneid.LENGTH0.0700.0040.072
droAna1.genscan.LENGTH0.0230.0000.024
droAna1.xenoRefGene.LENGTH0.2690.0040.273
droAna2.genscan.LENGTH0.0460.0040.050
droAna2.xenoRefGene.LENGTH0.3260.0040.330
droEre1.genscan.LENGTH0.0410.0000.041
droEre1.xenoRefGene.LENGTH0.5920.0000.592
droGri1.genscan.LENGTH0.0480.0040.051
droGri1.xenoRefGene.LENGTH0.2890.0000.290
droMoj1.geneid.LENGTH0.1300.0080.137
droMoj1.genscan.LENGTH0.10.00.1
droMoj1.xenoRefGene.LENGTH0.2430.0160.258
droMoj2.genscan.LENGTH0.0480.0080.057
droMoj2.xenoRefGene.LENGTH0.3450.0080.353
droPer1.genscan.LENGTH0.0370.0200.059
droPer1.xenoRefGene.LENGTH0.3260.0000.326
droSec1.genscan.LENGTH0.0570.0160.079
droSec1.xenoRefGene.LENGTH0.3450.0000.355
droSim1.geneid.LENGTH0.0480.0200.068
droSim1.genscan.LENGTH0.0590.0200.079
droSim1.xenoRefGene.LENGTH0.2780.0040.282
droVir1.geneid.LENGTH0.1210.0000.121
droVir1.genscan.LENGTH0.0770.0240.101
droVir1.xenoRefGene.LENGTH0.2680.0040.272
droVir2.genscan.LENGTH0.0910.0080.100
droVir2.xenoRefGene.LENGTH0.3040.0040.307
droYak1.geneid.LENGTH0.3730.0120.386
droYak1.genscan.LENGTH0.0270.0160.043
droYak1.xenoRefGene.LENGTH0.2500.0000.249
droYak2.genscan.LENGTH0.0430.0010.046
droYak2.xenoRefGene.LENGTH0.3030.0040.307
equCab1.geneSymbol.LENGTH0.0040.0040.008
equCab1.geneid.LENGTH0.1000.0080.108
equCab1.nscanGene.LENGTH0.0470.0200.067
equCab1.refGene.LENGTH0.0080.0000.008
equCab1.sgpGene.LENGTH0.1140.0040.118
equCab2.ensGene.LENGTH0.1360.0110.148
equCab2.geneSymbol.LENGTH0.010.000.01
equCab2.nscanGene.LENGTH0.0590.0200.079
equCab2.refGene.LENGTH0.0090.0000.010
equCab2.xenoRefGene.LENGTH0.7060.0000.707
felCat3.ensGene.LENGTH0.4450.0000.445
felCat3.geneSymbol.LENGTH0.0050.0000.006
felCat3.geneid.LENGTH0.9170.0040.921
felCat3.genscan.LENGTH0.1550.0120.167
felCat3.nscanGene.LENGTH0.4680.0040.472
felCat3.refGene.LENGTH0.0060.0000.005
felCat3.sgpGene.LENGTH0.1330.0000.134
felCat3.xenoRefGene.LENGTH1.1740.0081.183
fr1.ensGene.LENGTH0.1580.0050.164
fr1.genscan.LENGTH0.0650.0000.066
fr2.ensGene.LENGTH0.1670.0080.174
galGal2.ensGene.LENGTH0.0630.0000.064
galGal2.geneSymbol.LENGTH0.0190.0080.027
galGal2.geneid.LENGTH0.0450.0190.065
galGal2.genscan.LENGTH0.0630.0200.082
galGal2.refGene.LENGTH0.0210.0040.026
galGal2.sgpGene.LENGTH0.0620.0160.078
galGal3.ensGene.LENGTH0.0920.0040.095
galGal3.geneSymbol.LENGTH0.0110.0090.023
galGal3.genscan.LENGTH0.1110.0120.123
galGal3.nscanGene.LENGTH0.0700.0030.074
galGal3.refGene.LENGTH0.0150.0070.023
galGal3.xenoRefGene.LENGTH0.5370.0010.537
gasAcu1.ensGene.LENGTH0.1400.0170.159
gasAcu1.nscanGene.LENGTH0.1080.0120.123
hg16.acembly.LENGTH0.8700.0050.875
hg16.ensGene.LENGTH0.0790.0000.079
hg16.exoniphy.LENGTH0.2370.0000.237
hg16.geneSymbol.LENGTH0.1230.0000.123
hg16.geneid.LENGTH0.0630.0150.078
hg16.genscan.LENGTH0.0670.0040.071
hg16.knownGene.LENGTH0.1700.0080.177
hg16.refGene.LENGTH0.1100.0000.111
hg16.sgpGene.LENGTH0.0620.0000.062
hg17.acembly.LENGTH0.5340.0000.533
hg17.acescan.LENGTH0.0140.0000.014
hg17.ccdsGene.LENGTH0.0250.0070.034
hg17.ensGene.LENGTH0.2520.0240.276
hg17.exoniphy.LENGTH0.4160.0000.416
hg17.geneSymbol.LENGTH0.1240.0000.124
hg17.geneid.LENGTH0.0840.0030.088
hg17.genscan.LENGTH0.0680.0010.069
hg17.knownGene.LENGTH0.2200.0010.223
hg17.refGene.LENGTH0.1140.0000.113
hg17.sgpGene.LENGTH0.0790.0030.084
hg17.vegaGene.LENGTH0.0440.0110.056
hg17.vegaPseudoGene.LENGTH0.0180.0070.023
hg17.xenoRefGene.LENGTH0.2390.0000.241
hg18.acembly.LENGTH0.8800.0080.888
hg18.acescan.LENGTH0.0150.0000.016
hg18.ccdsGene.LENGTH0.0450.0080.053
hg18.ensGene.LENGTH0.2250.0040.228
hg18.exoniphy.LENGTH0.4800.0000.481
hg18.geneSymbol.LENGTH0.2060.0030.209
hg18.geneid.LENGTH0.0800.0080.107
hg18.genscan.LENGTH0.0620.0070.070
hg18.knownGene.LENGTH0.1520.0120.164
hg18.knownGeneOld3.LENGTH0.4670.0160.483
hg18.refGene.LENGTH0.1030.0040.107
hg18.sgpGene.LENGTH0.0890.0120.100
hg18.sibGene.LENGTH0.3620.0000.362
hg18.xenoRefGene.LENGTH0.3660.0160.382
hg19.ccdsGene.LENGTH0.0520.0040.056
hg19.ensGene.LENGTH0.4020.0200.422
hg19.exoniphy.LENGTH0.4120.0000.411
hg19.geneSymbol.LENGTH0.1080.0080.117
hg19.knownGene.LENGTH0.2760.0040.279
hg19.nscanGene.LENGTH0.1630.0000.162
hg19.refGene.LENGTH0.1210.0640.189
hg19.xenoRefGene.LENGTH0.5810.0000.580
loxAfr3.xenoRefGene.LENGTH0.9530.0040.956
mm7.ensGene.LENGTH0.1970.0000.197
mm7.geneSymbol.LENGTH0.0840.0040.088
mm7.geneid.LENGTH0.0820.0160.098
mm7.genscan.LENGTH0.0710.0000.071
mm7.knownGene.LENGTH0.2190.0040.224
mm7.refGene.LENGTH0.0880.0000.087
mm7.sgpGene.LENGTH0.0740.0200.094
mm7.xenoRefGene.LENGTH0.3470.0040.352
mm8.ccdsGene.LENGTH0.0240.0120.035
mm8.ensGene.LENGTH0.5070.0000.511
mm8.geneSymbol.LENGTH0.0810.0000.081
mm8.geneid.LENGTH0.0810.0120.094
mm8.genscan.LENGTH0.0710.0000.071
mm8.knownGene.LENGTH0.1010.0040.105
mm8.nscanGene.LENGTH0.0680.0000.069
mm8.refGene.LENGTH0.0980.0000.098
mm8.sgpGene.LENGTH0.0930.0040.097
mm8.sibGene.LENGTH0.2630.0000.262
mm8.xenoRefGene.LENGTH0.4100.0120.423
mm9.acembly.LENGTH0.4160.0000.416
mm9.ccdsGene.LENGTH0.0310.0120.042
mm9.ensGene.LENGTH0.1830.0120.196
mm9.exoniphy.LENGTH0.7120.0000.712
mm9.geneSymbol.LENGTH0.0870.0000.087
mm9.geneid.LENGTH0.1000.0080.108
mm9.genscan.LENGTH0.0750.0070.080
mm9.knownGene.LENGTH0.5340.0290.565
mm9.nscanGene.LENGTH0.0650.0040.069
mm9.refGene.LENGTH0.0940.0000.095
mm9.sgpGene.LENGTH0.0930.0120.105
mm9.xenoRefGene.LENGTH0.4530.0120.471
monDom1.genscan.LENGTH0.0680.0080.076
monDom4.ensGene.LENGTH0.0850.0040.090
monDom4.geneSymbol.LENGTH0.0060.0000.006
monDom4.genscan.LENGTH0.0630.0190.083
monDom4.nscanGene.LENGTH0.0740.0160.090
monDom4.refGene.LENGTH0.0020.0040.006
monDom4.xenoRefGene.LENGTH0.4050.0030.409
monDom5.ensGene.LENGTH0.2220.0000.222
monDom5.geneSymbol.LENGTH0.0040.0000.005
monDom5.genscan.LENGTH0.0540.0000.054
monDom5.nscanGene.LENGTH0.1080.0000.107
monDom5.refGene.LENGTH0.0010.0040.005
monDom5.xenoRefGene.LENGTH0.7140.0000.716
ornAna1.ensGene.LENGTH0.1000.0280.129
ornAna1.geneSymbol.LENGTH0.0040.0000.004
ornAna1.refGene.LENGTH0.0040.0000.003
ornAna1.xenoRefGene.LENGTH0.690.000.69
oryLat2.ensGene.LENGTH0.0990.0000.099
oryLat2.geneSymbol.LENGTH0.0070.0000.006
oryLat2.refGene.LENGTH0.0060.0000.006
oryLat2.xenoRefGene.LENGTH0.7300.0000.734
panTro1.ensGene.LENGTH0.1040.0030.108
panTro1.geneid.LENGTH0.0610.0120.072
panTro1.genscan.LENGTH0.0660.0000.066
panTro1.xenoRefGene.LENGTH0.1380.0160.153
panTro2.ensGene.LENGTH0.1790.0080.188
panTro2.geneSymbol.LENGTH0.1170.0040.120
panTro2.genscan.LENGTH0.0670.0000.066
panTro2.nscanGene.LENGTH0.0650.0000.065
panTro2.refGene.LENGTH0.1910.0080.198
panTro2.xenoRefGene.LENGTH0.5510.0050.555
petMar1.xenoRefGene.LENGTH0.3190.0120.331
ponAbe2.ensGene.LENGTH0.4690.0080.477
ponAbe2.geneSymbol.LENGTH0.0140.0000.017
ponAbe2.genscan.LENGTH0.0580.0000.058
ponAbe2.nscanGene.LENGTH0.0580.0000.058
ponAbe2.refGene.LENGTH0.0120.0040.016
ponAbe2.xenoRefGene.LENGTH0.6510.0000.651
priPac1.xenoRefGene.LENGTH0.3380.0000.338
rheMac2.ensGene.LENGTH0.1370.0030.142
rheMac2.geneSymbol.LENGTH0.0030.0040.007
rheMac2.geneid.LENGTH0.0700.0070.078
rheMac2.nscanGene.LENGTH0.0610.0000.061
rheMac2.refGene.LENGTH0.0080.0000.008
rheMac2.sgpGene.LENGTH0.0780.0080.085
rheMac2.xenoRefGene.LENGTH0.5730.0010.576
rn3.ensGene.LENGTH0.1240.0030.129
rn3.geneSymbol.LENGTH0.0610.0190.081
rn3.geneid.LENGTH0.0570.0000.057
rn3.genscan.LENGTH0.0660.0080.074
rn3.knownGene.LENGTH0.0340.0000.034
rn3.nscanGene.LENGTH0.0590.0000.060
rn3.refGene.LENGTH0.0630.0080.071
rn3.sgpGene.LENGTH0.0610.0000.060
rn3.xenoRefGene.LENGTH0.5720.0000.573
rn4.ensGene.LENGTH0.5350.0040.539
rn4.geneSymbol.LENGTH0.0440.0240.068
rn4.geneid.LENGTH0.0900.0120.102
rn4.genscan.LENGTH0.0660.0080.074
rn4.knownGene.LENGTH0.0310.0120.043
rn4.nscanGene.LENGTH0.0590.0320.091
rn4.refGene.LENGTH0.0580.0200.077
rn4.sgpGene.LENGTH0.1050.0040.109
rn4.xenoRefGene.LENGTH0.3940.0000.394
sacCer1.ensGene.LENGTH0.0280.0000.028
sacCer2.ensGene.LENGTH0.0200.0080.028
strPur1.geneSymbol.LENGTH0.0020.0040.007
strPur1.genscan.LENGTH0.070.000.07
strPur1.refGene.LENGTH0.0060.0000.006
strPur1.xenoRefGene.LENGTH0.6850.0040.691
strPur2.geneSymbol.LENGTH0.0020.0040.006
strPur2.genscan.LENGTH0.1150.0000.116
strPur2.refGene.LENGTH0.0070.0000.006
strPur2.xenoRefGene.LENGTH0.7390.0000.742
supportedGeneIDs0.0080.0040.012
supportedGenomes0.0650.0170.209
taeGut1.ensGene.LENGTH0.1200.0040.124
taeGut1.geneSymbol.LENGTH0.0040.0000.004
taeGut1.genscan.LENGTH0.0420.0080.051
taeGut1.nscanGene.LENGTH0.0320.0120.044
taeGut1.refGene.LENGTH0.0040.0000.004
taeGut1.xenoRefGene.LENGTH0.5440.0110.558
tetNig1.ensGene.LENGTH0.1180.0040.122
tetNig1.geneid.LENGTH0.1390.0080.147
tetNig1.genscan.LENGTH0.0760.0120.088
tetNig1.nscanGene.LENGTH0.0940.0000.094
tetNig2.ensGene.LENGTH0.0820.0040.086
unfactor0.0060.0000.006
xenTro1.genscan.LENGTH0.2220.0080.229
xenTro2.ensGene.LENGTH0.1020.0200.124
xenTro2.geneSymbol.LENGTH0.0410.0080.049
xenTro2.genscan.LENGTH0.0850.0120.097
xenTro2.refGene.LENGTH0.0340.0120.046